RegulonDB RegulonDB 10.8: Gene Form
   

ycbU gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

elfG ycbU ycbV elfC ycbF

Gene      
Name: ycbU    Texpresso search in the literature
Synonym(s): ECK0933, G6484, b0942
Genome position(nucleotides): 1002889 --> 1003431 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 47.15
External database links:  
ASAP:
 ABE-0003193
ECHOBASE:
 EB3477
OU-MICROARRAY:
 b0942
PortEco:
 ycbU
STRING:
 511145.b0942
COLOMBOS: ycbU


Product      
Name: putative fimbrial protein YcbU
Synonym(s): YcbU
Sequence: Get amino acid sequence Fasta Format
Cellular location: extracellular space,pilus
Molecular weight: 18.914
Isoelectric point: 4.762
Motif(s):
 
Type Positions Sequence
25 -> 180 GPEQVSMHIYGNVVDQGCDVATKSALQNIHIGDFNISDFQAANTVSTAADLNIDITGCAAGITGADVLFSGEADTLAPTLLKLTDTGGSGGMATGIAVQILDAQSQQEIPLNQVQPLTPLKAGDNTLKYQLRYKSTKAGATGGNATAVLYFDLVYQ
1 -> 24 MKKKTIFQCVILFFSILNIHVGMA
32 -> 180 HIYGNVVDQGCDVATKSALQNIHIGDFNISDFQAANTVSTAADLNIDITGCAAGITGADVLFSGEADTLAPTLLKLTDTGGSGGMATGIAVQILDAQSQQEIPLNQVQPLTPLKAGDNTLKYQLRYKSTKAGATGGNATAVLYFDLVYQ

 
Classification:
Multifun Terms (GenProtEC)  
  6 - cell structure --> 6.5 - pilus
Gene Ontology Terms (GO)  
cellular_component GO:0009289 - pilus
GO:0005576 - extracellular region
biological_process GO:0007155 - cell adhesion
GO:0043711 - pilus organization
GO:0043709 - cell adhesion involved in single-species biofilm formation
Note(s): Note(s): ...[more].
Evidence: [HIFS] Human inference of function from sequence
[IMP] Inferred from mutant phenotype
Reference(s): [1] Korea CG., et al., 2010
[2] Korea CG., et al., 2011
[3] Wurpel DJ., et al., 2013
External database links:  
ECOCYC:
 G6484-MONOMER
ECOLIWIKI:
 b0942
INTERPRO:
 IPR000259
INTERPRO:
 IPR036937
INTERPRO:
 IPR008966
MODBASE:
 P75859
PFAM:
 PF00419
PRIDE:
 P75859
REFSEQ:
 NP_415462
SMR:
 P75859
UNIPROT:
 P75859


Operon      
Name: elfDCG-ycbUVF         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Korea CG., Badouraly R., Prevost MC., Ghigo JM., Beloin C., 2010, Escherichia coli K-12 possesses multiple cryptic but functional chaperone-usher fimbriae with distinct surface specificities., Environ Microbiol 12(7):1957-77

 [2] Korea CG., Ghigo JM., Beloin C., 2011, The sweet connection: Solving the riddle of multiple sugar-binding fimbrial adhesins in Escherichia coli: Multiple E. coli fimbriae form a versatile arsenal of sugar-binding lectins potentially involved in surface-colonisation and tissue tropism., Bioessays 33(4):300-11

 [3] Wurpel DJ., Beatson SA., Totsika M., Petty NK., Schembri MA., 2013, Chaperone-usher fimbriae of Escherichia coli., PLoS One 8(1):e52835

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