Gene
Name:	cspH
Synonym(s):	ECK0979, G6510, b0989, cspK
Genome position(nucleotides):	1050963 <-- 1051175
Strand:	reverse
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	46.95
External database links:

ASAP:	ABE-0003341
ECHOBASE:	EB4029
ECOLIHUB:	cspH
OU-MICROARRAY:	b0989
STRING:	511145.b0989
COLOMBOS:	cspH

Type	Name	Post Left	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
promoter	TSS_1309 (cluster)	1050701	reverse	nd	[RS-EPT-CBR]	[4]
promoter	cspHp8	1051205	reverse	nd	[COMP-AINF]	[5]
promoter	cspHp10	1051278	reverse	nd	[COMP-AINF]	[5]
promoter	cspHp12	1051284	reverse	nd	[COMP-AINF]	[5]
promoter	cspHp14	1051304	reverse	nd	[COMP-AINF]	[5]
promoter	cspGp	1051305	forward	nd	[COMP-AINF-POSITIONAL-IDENTIFICATION], [RS-EPT-CBR]	[4], [6]
promoter	cspHp15	1051307	reverse	nd	[COMP-AINF]	[5]
promoter	cspHp9	1051330	reverse	nd	[COMP-AINF]	[5]
promoter	cspHp13	1051373	reverse	nd	[COMP-AINF]	[5]

Evidence
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates
[COMP-AINF] Inferred computationally without human oversight
[COMP-AINF-POSITIONAL-IDENTIFICATION] Automated inference of promoter position

Reference(s)
[1] Higuchi K., Yabuki T., Ito M., Kigawa T., 2020, Cold shock proteins improve E. coli cell-free synthesis in terms of soluble yields of aggregation-prone proteins., Biotechnol Bioeng 117(6):1628-1639
[2] Kram KE., Henderson AL., Finkel SE., 2020, Escherichia coli Has a Unique Transcriptional Program in Long-Term Stationary Phase Allowing Identification of Genes Important for Survival., mSystems 5(4)
[3] Nahku R., Peebo K., Valgepea K., Barrick JE., Adamberg K., Vilu R., 2011, Stock culture heterogeneity rather than new mutational variation complicates short-term cell physiology studies of Escherichia coli K-12 MG1655 in continuous culture., Microbiology 157(Pt 9):2604-2610
[4] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.
[5] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78
[6] Wang N., Yamanaka K., Inouye M., 1999, CspI, the ninth member of the CspA family of Escherichia coli, is induced upon cold shock., J Bacteriol 181(5):1603-9

RNA cis-regulatory element

Attenuation:	Transcriptional