RegulonDB RegulonDB 11.1: Gene Form
   

yccM gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

torS yccM gnsA ymcE TSS_1311 TSS_1311

Gene      
Name: yccM    Texpresso search in the literature
Synonym(s): ECK0983, G6513, b0992
Genome position(nucleotides): 1052289 <-- 1053362
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 49.16
External database links:  
ASAP:
 ABE-0003351
ECHOBASE:
 EB3023
ECOLIHUB:
 yccM
OU-MICROARRAY:
 b0992
STRING:
 511145.b0992
COLOMBOS: yccM


Product      
Name: putative electron transport protein YccM
Synonym(s): YccM, putative 4Fe-4S membrane protein
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 40.097
Isoelectric point: 9.838
Motif(s):
 
Type Positions Sequence Comment
37 -> 54 LLLLAMNIYIAITFWYWV UniProt: Helical.
92 -> 114 QLPSVHAAAMLLLVAFIVISLLL UniProt: Helical.
97 -> 142 HAAAMLLLVAFIVISLLLKKAFCSWLCPVGTLSELIGDLGNKLFGR
159 -> 181 YLLLSFFIYIALLMPAQAIHYFM UniProt: Helical.
196 -> 218 FFRHMGTATLISVTVLLIASLFI UniProt: Helical.

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
molecular_function GO:0046872 - metal ion binding
GO:0051536 - iron-sulfur cluster binding
GO:0051539 - 4 iron, 4 sulfur cluster binding
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 P52636
ECOCYC:
 G6513-MONOMER
ECOLIWIKI:
 b0992
INTERPRO:
 IPR017896
INTERPRO:
 IPR017900
MODBASE:
 P52636
PFAM:
 PF12801
PRIDE:
 P52636
PROSITE:
 PS51379
PROSITE:
 PS00198
REFSEQ:
 NP_415512
SMR:
 P52636
UNIPROT:
 P52636


Operon      
Name: yccM         
Operon arrangement:
Transcription unit        Promoter
yccM


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1311 1053395 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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