RegulonDB RegulonDB 10.8: Gene Form
   

rutC gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

rutD rutB rutC

Gene      
Name: rutC    Texpresso search in the literature
Synonym(s): ECK1001, G6521, b1010, ycdK
Genome position(nucleotides): 1071773 <-- 1072159 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 54.01
External database links:  
ASAP:
 ABE-0003412
ECHOBASE:
 EB3617
OU-MICROARRAY:
 b1010
PortEco:
 rutC
STRING:
 511145.b1010
COLOMBOS: rutC


Product      
Name: putative aminoacrylate peracid reductase RutC
Synonym(s): RutC, YcdK
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 13.763
Isoelectric point: 5.588
Motif(s):
 
Type Positions Sequence
13 -> 125 APLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLETIRKVIETAGGTMADVTFNSIFITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIATIAH

 
Classification:
Multifun Terms (GenProtEC)  
  1 - metabolism --> 1.8 - metabolism of other compounds --> 1.8.3 - nitrogen metabolism
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
molecular_function GO:0016491 - oxidoreductase activity
GO:0019239 - deaminase activity
biological_process GO:0006208 - pyrimidine nucleobase catabolic process
GO:0019740 - nitrogen utilization
GO:0055114 - oxidation-reduction process
GO:0006212 - uracil catabolic process
GO:1901565 - organonitrogen compound catabolic process
Note(s): Note(s): ...[more].
Evidence: [IEP] Inferred from expression pattern
[IMP] Inferred from mutant phenotype
Reference(s): [1] Loh KD., et al., 2006
[2] Zimmer DP., et al., 2000
External database links:  
ECOCYC:
 G6521-MONOMER
ECOLIWIKI:
 b1010
INTERPRO:
 IPR019897
INTERPRO:
 IPR035959
INTERPRO:
 IPR019898
INTERPRO:
 IPR006175
MODBASE:
 P0AFQ5
PANTHER:
 PTHR11803
PDB:
 3V4D
PFAM:
 PF01042
PRIDE:
 P0AFQ5
PROSITE:
 PS01094
REFSEQ:
 NP_415530
SMR:
 P0AFQ5
UNIPROT:
 P0AFQ5


Operon      
Name: rutABCDEFG         
Operon arrangement:
Transcription unit        Promoter
rutABCDEFG


Transcriptional Regulation      
Display Regulation             
Activated by: PhoP, NtrC, ArcA
Repressed by: RutR


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Loh KD., Gyaneshwar P., Markenscoff Papadimitriou E., Fong R., Kim KS., Parales R., Zhou Z., Inwood W., Kustu S., 2006, A previously undescribed pathway for pyrimidine catabolism., Proc Natl Acad Sci U S A 103(13):5114-9

 [2] Zimmer DP., Soupene E., Lee HL., Wendisch VF., Khodursky AB., Peter BJ., Bender RA., Kustu S., 2000, Nitrogen regulatory protein C-controlled genes of Escherichia coli: scavenging as a defense against nitrogen limitation., Proc Natl Acad Sci U S A 97(26):14674-9

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