RegulonDB RegulonDB 10.9: Gene Form
   

ycfP gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ndh nagZ ycfP ArcA ArcA ArcA ArcA Fis ArcA IHF NsrR IHF PdhR FNR ArcA IHF Fis FNR Fis TSS_1441 (cluster) TSS_1441 (cluster) TSS_1440 TSS_1440 ndhp ndhp TSS_1439 TSS_1439 TSS_1438 TSS_1438 TSS_1437 TSS_1437

Gene      
Name: ycfP    Texpresso search in the literature
Synonym(s): ECK1094, G6568, b1108
Genome position(nucleotides): 1165143 --> 1165685 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
46.59
External database links:  
ASAP:
ABE-0003740
ECHOBASE:
EB3208
ECOLIHUB:
ycfP
OU-MICROARRAY:
b1108
STRING:
511145.b1108
COLOMBOS: ycfP


Product      
Name: UPF0227 protein YcfP
Synonym(s): YcfP
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 21.226
Isoelectric point: 6.605
Motif(s):
 
Type Positions Sequence
1 -> 177 MIIYLHGFDSNSPGNHEKVLQLQFIDPDVRLISYSTRHPKHDMQHLLKEVDKMLQLNVDERPLICGVGLGGYWAERIGFLCDIRQVIFNPNLFPYENMEGKIDRPEEYADIATKCVTNFREKNRDRCLVILSRNDEALNSQRTSEELHHYYEIVWDEEQTHKFKNISPHLQRIKAFK

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
molecular_function GO:0005515 - protein binding
Note(s): Note(s): ...[more].
External database links:  
DIP:
DIP-48123N
ECOCYC:
G6568-MONOMER
ECOLIWIKI:
b1108
INTERPRO:
IPR022987
INTERPRO:
IPR008886
INTERPRO:
IPR029058
MODBASE:
P0A8E1
PANTHER:
PTHR35602
PFAM:
PF05728
PRIDE:
P0A8E1
REFSEQ:
NP_415626
UNIPROT:
P0A8E1


Operon      
Name: hinT-ycfL-lpoB-thiK-nagZ-ycfP         
Operon arrangement:
Transcription unit        Promoter
hinT-ycfL-lpoB-thiK-nagZ-ycfP


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1437 1164943 forward nd [RS-EPT-CBR] [1]
  promoter TSS_1438 1165016 forward nd [RS-EPT-CBR] [1]
  promoter TSS_1439 1165531 forward nd [RS-EPT-CBR] [1]
  promoter TSS_1440 1166052 forward nd [RS-EPT-CBR] [1]
  promoter TSS_1441 (cluster) 1166069 forward For this promoter, there
Read more >
[RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


RegulonDB