RegulonDB RegulonDB 10.9: Gene Form
   

ymfE gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

lit ymfE ymfD litp9 litp9 litp8 litp8 litp1 litp1 ymfDp7 ymfDp7 ymfDp5 ymfDp5 ymfDp6 ymfDp6

Gene      
Name: ymfE    Texpresso search in the literature
Synonym(s): ECK1124, G6583, b1138
Genome position(nucleotides): 1197533 <-- 1198237 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
30.92
External database links:  
ASAP:
ABE-0003827
ECHOBASE:
EB3223
ECOLIHUB:
ymfE
OU-MICROARRAY:
b1138
STRING:
511145.b1138
COLOMBOS: ymfE


Product      
Name: e14 prophage; uncharacterized protein YmfE
Synonym(s): YmfE, e14 prophage; putative inner membrane protein
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 27.579
Isoelectric point: 9.355
Motif(s):
 
Type Positions Sequence
59 -> 79 INWALSFGILPCAFAIFAYLI
186 -> 206 LLSLFFFVILSFSVSGIIFAL
22 -> 42 TFLNTLIYCILLVIYEYIPLI
154 -> 174 FWIFFEFSIIALISFLIIFFC

 

Classification:
Multifun Terms (GenProtEC)  
  8 - extrachromosomal --> 8.1 - prophage genes and phage related functions
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
Note(s): Note(s): ...[more].
Reference(s): [1] Daley DO., et al., 2005
External database links:  
ECOCYC:
G6583-MONOMER
ECOLIWIKI:
b1138
PRIDE:
P75968
REFSEQ:
NP_415656
UNIPROT:
P75968


Operon      
Name: ymfED         
Operon arrangement:
Transcription unit        Promoter
ymfED


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter ymfDp6 1197589 reverse Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter ymfDp5 1197625 reverse Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter ymfDp7 1197661 reverse Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter litp1 1198516 forward Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter litp8 1198590 forward Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter litp9 1198668 forward Similarity to the consensus
Read more >
[ICWHO] [2]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Daley DO., Rapp M., Granseth E., Melen K., Drew D., von Heijne G., 2005, Global topology analysis of the Escherichia coli inner membrane proteome., Science 308(5726):1321-3

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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