RegulonDB RegulonDB 10.10: Gene Form
   

xisE gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

intE lit ymfH xisE terminator TSS_1491 TSS_1491

Gene      
Name: xisE    Texpresso search in the literature
Synonym(s): ECK1127, G6585, b1141, ymfG
Genome position(nucleotides): 1200787 <-- 1201032 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 44.31
External database links:  
ASAP:
 ABE-0003838
ECHOBASE:
 EB3995
ECOLIHUB:
 xisE
OU-MICROARRAY:
 b1141
STRING:
 511145.b1141
COLOMBOS: xisE


Product      
Name: e14 prophage; putative excisionase
Synonym(s): XisE, YmfG
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 9.287
Isoelectric point: 10.16
Motif(s):
 
Type Positions Sequence
5 -> 75 LTLEEWAAEKYRSNPPSVSTLRRYAKQNLFCPPAMKQGRLWRVREDAELVGELVTPVIKKNDSLLLQRILS

 
Classification:
Multifun Terms (GenProtEC)  
  8 - extrachromosomal --> 8.1 - prophage genes and phage related functions
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
molecular_function GO:0003677 - DNA binding
biological_process GO:0006310 - DNA recombination
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
 G6585-MONOMER
ECOLIWIKI:
 b1141
INTERPRO:
 IPR038137
INTERPRO:
 IPR012884
INTERPRO:
 IPR009061
PFAM:
 PF07825
PRIDE:
 P75970
PRODB:
 PRO_000024236
REFSEQ:
 NP_415659
SMR:
 P75970
UNIPROT:
 P75970


Operon      
Name: ymfH-xisE-intE         
Operon arrangement:
Transcription unit        Promoter
ymfH-xisE-intE


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1491 1201113 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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