RegulonDB RegulonDB 10.8: Gene Form
   

ymfJ gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ymfK ymfI ymfH ymfJ nc10 terminator TSS_1497 TSS_1497 TSS_1496 TSS_1496 croEp4 croEp4 ymfJp9 ymfJp9 ymfJp6 ymfJp6 ymfJp8 ymfJp8 ymfJp10 ymfJp10 TSS_1494 TSS_1494 TSS_1493 TSS_1493 TSS_1492 TSS_1492 ymfIp1 ymfIp1 TSS_1491 TSS_1491

Gene      
Name: ymfJ    Texpresso search in the literature
Synonym(s): ECK1130, G6588, b1144
Genome position(nucleotides): 1201776 <-- 1202084 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
46.93
External database links:  
ASAP:
ABE-0003848
ECHOBASE:
EB4332
OU-MICROARRAY:
b1144
PortEco:
ymfJ
STRING:
511145.b1144
COLOMBOS: ymfJ


Product      
Name: e14 prophage; uncharacterized protein YmfJ
Synonym(s): YmfJ
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 11.458
Isoelectric point: 9.355
Classification:
Multifun Terms (GenProtEC)  
  8 - extrachromosomal --> 8.1 - prophage genes and phage related functions
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
G6588-MONOMER
ECOLIWIKI:
b1144
PRIDE:
P75973
REFSEQ:
NP_415662
SMR:
P75973
UNIPROT:
P75973


Operon      
Name: ymfJ         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1491 1201113 reverse nd [RS-EPT-CBR] [1]
  promoter ymfIp1 1201440 forward Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter TSS_1492 1201468 forward nd [RS-EPT-CBR] [1]
  promoter TSS_1493 1201690 forward nd [RS-EPT-CBR] [1]
  promoter TSS_1494 1201727 forward nd [RS-EPT-CBR] [1]
  promoter ymfJp10 1202184 reverse Similarity to the consensus
Read more >
[ICWHO], [RS-EPT-CBR] [1], [2]
  promoter ymfJp8 1202185 reverse Similarity to the consensus
Read more >
[ICWHO], [RS-EPT-CBR] [1], [2]
  promoter ymfJp6 1202213 reverse Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter ymfJp9 1202259 reverse Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter croEp4 1202883 forward Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter TSS_1496 1202924 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1497 1202933 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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