Gene
Name:	ymfK
Synonym(s):	ECK1131, G6589, b1145, cohE
Genome position(nucleotides):	1202259 <-- 1202933 Genome Browser
Strand:	reverse
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	44.44
External database links:

ASAP:	ABE-0003851
ECHOBASE:	EB3997
OU-MICROARRAY:	b1145
PortEco:	ymfK
STRING:	511145.b1145
COLOMBOS:	ymfK

Type	Name	Post Left	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
promoter	ymfJp10	1202184	reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 5.228. P-value: 5.963e-6 Read more >	[ICWHO], [RS-EPT-CBR]	[2], [3]
promoter	ymfJp8	1202185	reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 4.263. P-value: 1.131e-5 Read more >	[ICWHO], [RS-EPT-CBR]	[2], [3]
promoter	ymfJp6	1202213	reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: good homology. Score: 3.68. P-value: 4.276e-5 Read more >	[ICWHO]	[2]
promoter	ymfJp9	1202259	reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: good homology. Score: 4.465. P-value: 1.670e-5 Read more >	[ICWHO]	[2]
promoter	croEp4	1202883	forward	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: poor homology. Score: 3.845. P-value: 3.363e-5 Read more >	[ICWHO]	[2]
promoter	TSS_1496	1202924	reverse	nd	[RS-EPT-CBR]	[3]
promoter	TSS_1497	1202933	reverse	nd	[RS-EPT-CBR]	[3]
promoter	cohEp8	1202955	reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: good homology. Score: 3.76. P-value: 8.719e-6 Read more >	[ICWHO]	[2]
promoter	croEp5	1203006	forward	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 4.713. P-value: 1.573e-5 Read more >	[ICWHO]	[2]
promoter	cohEp9	1203014	reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 4.198. P-value: 7.636e-5 Read more >	[ICWHO]	[2]
promoter	cohEp10	1203088	reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: good homology. Score: 5.095. P-value: 5.328e-5 Read more >	[ICWHO]	[2]

Evidence
[ICWHO] Inferred computationally without human oversight
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

Reference(s)
[1] Maguin E., Brody H., Hill CW., D'Ari R., 1986, SOS-associated division inhibition gene sfiC is part of excisable element e14 in Escherichia coli., J Bacteriol 168(1):464-6
[2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78
[3] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

RNA cis-regulatory element

Attenuation:	Translational