RegulonDB RegulonDB 10.8: Gene Form
   

stfE gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

tfaE pinE stfE tfaP mcrAp10 mcrAp10 mcrAp7 mcrAp7 pinEp3 pinEp3 pinEp1 pinEp1 tfaEp1 tfaEp1 tfaEp6 tfaEp6

Gene      
Name: stfE    Texpresso search in the literature
Synonym(s): ECK1143, G6599, b1157, ycfE
Type: Pseudo Gene
Genome position(nucleotides): 1209119 <-- 1209655 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
45.44
External database links:  
ASAP:
ABE-0003882
ECHOBASE:
EB1765
OU-MICROARRAY:
b1157
PortEco:
stfE
COLOMBOS: stfE


Product      
Name: e14 prophage; putative side tail fiber protein fragment
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 4.927
Classification:
Multifun Terms (GenProtEC)  
  8 - extrachromosomal --> 8.1 - prophage genes and phage related functions
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
G6599-MONOMER
ECOLIWIKI:
b1157
INTERPRO:
IPR011083
INTERPRO:
IPR037053
MODBASE:
P33227
PFAM:
PF07484
PRIDE:
P33227
REFSEQ:
NP_415675
SMR:
P33227
UNIPROT:
P33227


Operon      
Name: stfE-tfaE         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter tfaEp6 1209189 reverse Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter tfaEp1 1209266 reverse Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter pinEp1 1209527 forward Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter pinEp3 1209672 forward Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter mcrAp7 1210139 forward Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter mcrAp10 1210195 forward Similarity to the consensus
Read more >
[ICWHO] [1]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


RegulonDB