RegulonDB RegulonDB 10.8: Gene Form
   

ymgC gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

pdeG ariR ymgC ymgFp1 ymgFp1 ycgGp7 ycgGp7

Gene      
Name: ymgC    Texpresso search in the literature
Synonym(s): ECK1154, G6607, b1167
Genome position(nucleotides): 1216748 --> 1216996 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
35.74
External database links:  
ASAP:
ABE-0003915
ECHOBASE:
EB4039
OU-MICROARRAY:
b1167
PortEco:
ymgC
STRING:
511145.b1167
COLOMBOS: ymgC


Product      
Name: protein YmgC
Synonym(s): YmgC, protein involved in biofilm formation
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 9.701
Isoelectric point: 5.029
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
biological_process GO:0044010 - single-species biofilm formation
Note(s): Note(s): ...[more].
Reference(s): [1] Duval V., et al., 2017
External database links:  
ECOCYC:
G6607-MONOMER
ECOLIWIKI:
b1167
PRIDE:
P75994
REFSEQ:
NP_415685
UNIPROT:
P75994


Operon      
Name: ycgZ-ymgA-ariR-ymgC         
Operon arrangement:
Transcription unit        Promoter
ycgZ-ymgA-ariR-ymgC
ariR
 


Transcriptional Regulation      
Display Regulation             
Activated by: MarA
Repressed by: BluR


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter ycgGp7 1217307 forward Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter ymgFp1 1218814 forward Similarity to the consensus
Read more >
[ICWHO] [2]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Duval V., Foster K., Brewster J., Levy SB., 2017, A Novel Regulatory Cascade Involving BluR, YcgZ, and Lon Controls the Expression of Escherichia coli OmpF Porin., Front Microbiol 8:1148

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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