RegulonDB RegulonDB 10.8: Gene Form
   

ymgD gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ycgH ymgG ymgD ymgF terminator

Gene      
Name: ymgD    Texpresso search in the literature
Synonym(s): ECK1158, G6611, b1171
Genome position(nucleotides): 1222305 <-- 1222634 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 45.15
External database links:  
ASAP:
 ABE-0003926
ECHOBASE:
 EB4040
OU-MICROARRAY:
 b1171
PortEco:
 ymgD
STRING:
 511145.b1171
COLOMBOS: ymgD


Product      
Name: PF16456 family protein YmgD
Synonym(s): YmgD
Sequence: Get amino acid sequence Fasta Format
Cellular location: periplasmic space
Molecular weight: 11.852
Isoelectric point: 5.105
Motif(s):
 
Type Positions Sequence
20 -> 109 QDYNIKNGLPSETYITCAEANEMAKTDSAQVAEIVAVMGNASVASRDLKIEQSPELSAKVVEKLNQVCAKDPQMLLITAIDDTMRAIGKK
26 -> 107 NGLPSETYITCAEANEMAKTDSAQVAEIVAVMGNASVASRDLKIEQSPELSAKVVEKLNQVCAKDPQMLLITAIDDTMRAIG
1 -> 19 MKKFALLAGLFVFAPMTWA

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0030288 - outer membrane-bounded periplasmic space
Note(s): Note(s): ...[more].
External database links:  
DIP:
 DIP-48276N
ECOCYC:
 G6611-MONOMER
ECOLIWIKI:
 b1171
INTERPRO:
 IPR032497
INTERPRO:
 IPR038304
PDB:
 2LRM
PDB:
 2LRV
PFAM:
 PF16456
PRIDE:
 P0AB46
REFSEQ:
 NP_415689
SMR:
 P0AB46
UNIPROT:
 P0AB46


Operon      
Name: ymgGD         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References



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