RegulonDB RegulonDB 10.9: Gene Form
   

ymgG gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ymgG ymgD ymgI terminator TSS_1500 TSS_1500

Gene      
Name: ymgG    Texpresso search in the literature
Synonym(s): ECK1159, G6612, b1172
Genome position(nucleotides): 1222644 <-- 1222988 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
52.17
External database links:  
ASAP:
ABE-0003928
ECHOBASE:
EB4334
ECOLIHUB:
ymgG
OU-MICROARRAY:
b1172
STRING:
511145.b1172
COLOMBOS: ymgG


Product      
Name: PF13488 family protein YmgG
Synonym(s): YmgG
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 10.807
Isoelectric point: 11.242
Motif(s):
 
Type Positions Sequence
30 -> 111 GALLGAGVGLLTGNGVNGVLKGAAVGAGVGAVTEKGRDGKNARKGAKVGAAVGAVTGVLTGNGLEGAIKGAVIGGTGGAILG
25 -> 61 NRTTKGALLGAGVGLLTGNGVNGVLKGAAVGAGVGAV
94 -> 111 EGAIKGAVIGGTGGAILG

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
G6612-MONOMER
ECOLIWIKI:
b1172
INTERPRO:
IPR022833
INTERPRO:
IPR025693
INTERPRO:
IPR039567
PFAM:
PF13436
PRIDE:
Q7DFV3
REFSEQ:
NP_415690
UNIPROT:
Q7DFV3


Operon      
Name: ymgGD         
Operon arrangement:
Transcription unit        Promoter
ymgGD


RNA cis-regulatory element    
Attenuation: Translational


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1500 1223097 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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