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| Gene |  |
|
|---|---|---|
| Name: | ycgL  |
|
| Synonym(s): | ECK1167, G6616, b1179 | |
| Genome position(nucleotides): | 1227681 --> 1228007 Genome Browser | |
| Strand: | forward | |
| Sequence: | Get nucleotide sequence FastaFormat | |
GC content %: |
43.12 | |
| External database links: | ||
ASAP: |
ABE-0003954 | |
ECHOBASE: |
EB3652 | |
OU-MICROARRAY: |
b1179 | |
PortEco: |
ycgL | |
STRING: |
511145.b1179 | |
| COLOMBOS: | ycgL |
| Product | |
|||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Name: | PF05166 family protein YcgL | |||||||||
| Synonym(s): | YcgL | |||||||||
| Sequence: | Get amino acid sequence Fasta Format | |||||||||
| Molecular weight: | 12.414 | |||||||||
| Isoelectric point: | 9.633 | |||||||||
| Motif(s): | ||||||||||
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| Classification: |
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| Note(s): | Note(s): ...[more]. | |||||||||
| Evidence: | [IMP] Inferred from mutant phenotype | |||||||||
| Reference(s): | [1] Junker LM., et al., 2006 | |||||||||
| External database links: | ||||||||||
ECOCYC: |
G6616-MONOMER | |||||||||
ECOLIWIKI: |
b1179 | |||||||||
INTERPRO: |
IPR038068 | |||||||||
INTERPRO: |
IPR027354 | |||||||||
PANTHER: |
PTHR38109 | |||||||||
PDB: |
2H7A | |||||||||
PFAM: |
PF05166 | |||||||||
PRIDE: |
P0AB43 | |||||||||
PRODOM: |
PD030374 | |||||||||
PROSITE: |
PS51648 | |||||||||
REFSEQ: |
NP_415697 | |||||||||
SMR: |
P0AB43 | |||||||||
UNIPROT: |
P0AB43 | |||||||||
| RNA cis-regulatory element | |
|---|---|
| Attenuation: | Translational |
| Elements in the selected gene context region unrelated to any object in RegulonDB | |
|---|
| Type | Name | Post Left | Post Right | Strand | Notes | Evidence (Confirmed, Strong, Weak) | References | |
|---|---|---|---|---|---|---|---|---|
| promoter | TSS_1509 | 1227506 | reverse | nd | [RS-EPT-CBR] | [2] | ||
| promoter | ycgNp1 | 1228683 | forward |
Similarity to the consensus Read more > |
[ICWHO] | [3] |
| Reference(s) |
|
|---|---|
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates