RegulonDB RegulonDB 10.9: Gene Form
   

insZ gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

adhE insZ tdk TSS_1617 TSS_1617 TSS_1616 TSS_1616 TSS_1615 TSS_1615 TSS_1614 (cluster) TSS_1614 (cluster) TSS_1613 TSS_1613 TSS_1612 TSS_1612 TSS_1611 TSS_1611 TSS_1610 TSS_1610 TSS_1609 (cluster) TSS_1609 (cluster) TSS_1608 TSS_1608 TSS_1607 TSS_1607 TSS_1606 TSS_1606 TSS_1605 TSS_1605 TSS_1604 TSS_1604 TSS_1603 TSS_1603 TSS_1602 TSS_1602 TSS_1601 (cluster) TSS_1601 (cluster) TSS_1600 TSS_1600 TSS_1599 (cluster) TSS_1599 (cluster) TSS_1598 TSS_1598 TSS_1597 TSS_1597 TSS_1596 TSS_1596 TSS_1595 TSS_1595 TSS_1594 TSS_1594 TSS_1593 TSS_1593 TSS_1592 TSS_1592 TSS_1591 TSS_1591 TSS_1590 TSS_1590 TSS_1589 TSS_1589 TSS_1588 TSS_1588 TSS_1587 TSS_1587 TSS_1586 TSS_1586 TSS_1585 TSS_1585 TSS_1584 TSS_1584 TSS_1583 TSS_1583 TSS_1582 TSS_1582 TSS_1581 TSS_1581 TSS_1580 TSS_1580 TSS_1579 TSS_1579 TSS_1578 TSS_1578 TSS_1577 TSS_1577

Gene      
Name: insZ    Texpresso search in the literature
Synonym(s): ECK1234, G6632, b1239, b1240, b4573, ychG
Type: Pseudo Gene
Genome position(nucleotides): 1294426 <-- 1295322 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
55.41
External database links:  
ASAP:
ABE-0285106
ASAP:
ABE-0004161
ASAP:
ABE-0004159
ECHOBASE:
EB1568
ECHOBASE:
EB4339
ECOLIHUB:
ychG_1
ECOLIHUB:
ychG_2
ECOLIWIKI:
b1239
OU-MICROARRAY:
b1240
OU-MICROARRAY:
b1239
UNIPROT:
P30192
COLOMBOS: insZ


Product      
Name: putative transposase InsZ
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 9.867
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
molecular_function GO:0003677 - DNA binding
GO:0004803 - transposase activity
biological_process GO:0006313 - transposition, DNA-mediated
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
G6632-MONOMER
ECOLIWIKI:
b1240
INTERPRO:
IPR012337
INTERPRO:
IPR024473
INTERPRO:
IPR002559
PFAM:
PF13006
PFAM:
PF01609
PRIDE:
P30192
UNIPROT:
P30192


Operon      
Name: insZ         
Operon arrangement:
Transcription unit        Promoter
insZ


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1577 1295543 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1578 1295679 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1579 1295919 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1580 1296310 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1581 1296316 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1582 1296554 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1583 1296583 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1584 1296586 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1585 1296589 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1586 1296611 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1587 1296616 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1588 1296672 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1589 1296674 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1590 1296756 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1591 1296775 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1592 1296797 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1593 1296870 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1594 1296892 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1595 1296896 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1596 1297024 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1597 1297170 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1598 1297212 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1599 (cluster) 1297288 reverse For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_1600 1297462 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1601 (cluster) 1297466 reverse For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_1602 1297601 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1603 1297609 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1604 1297628 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1605 1297669 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1606 1297682 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1607 1297691 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1608 1297717 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1609 (cluster) 1297803 reverse For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_1610 1297806 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1611 1297812 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1612 1297840 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1613 1297873 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1614 (cluster) 1297877 reverse For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_1615 1298092 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1616 1298104 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1617 1298113 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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