RegulonDB RegulonDB 10.9: Gene Form
   

ycjR gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ycjS ycjQ ycjR ycjT

Gene      
Name: ycjR    Texpresso search in the literature
Synonym(s): ECK1309, G6652, b1314, dte
Genome position(nucleotides): 1376034 --> 1376822 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
53.61
External database links:  
ASAP:
ABE-0004414
ECHOBASE:
EB3674
ECOLIHUB:
ycjR
OU-MICROARRAY:
b1314
STRING:
511145.b1314
COLOMBOS: ycjR


Product      
Name: 3-dehydro-D-guloside 4-epimerase
Synonym(s): 3-ketohexose 4-epimerase, Dte, YcjR, putative ketohexose-3-epimerase YcjR
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 29.832
Isoelectric point: 5.207
Motif(s):
 
Type Positions Sequence
19 -> 262 FRYIKEMGFDGFEIDGKLLVNNIEEVKAAIKETGLPVTTACGGYDGWIGDFIEERRLNGLKQIERILEALAEVGGKGIVVPAAWGMFTFRLPPMTSPRSLDGDRKMVSDSLRVLEQVAARTGTVVYLEPLNRYQDHMINTLADARRYIVENDLKHVQIIGDFYHMNIEEDNLAQALHDNRDLLGHVHIADNHRYQPGSGTLDFHALFEQLRADNYQGYVVYEGRIRAEDPAQAYRDSLAWLRTC

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
molecular_function GO:0016853 - isomerase activity
GO:0046872 - metal ion binding
GO:0016857 - racemase and epimerase activity, acting on carbohydrates and derivatives
GO:0030145 - manganese ion binding
GO:0042802 - identical protein binding
biological_process GO:0005975 - carbohydrate metabolic process
External database links:  
ECOCYC:
G6652-MONOMER
ECOLIWIKI:
b1314
INTERPRO:
IPR013022
INTERPRO:
IPR036237
MODBASE:
P76044
PFAM:
PF01261
PRIDE:
P76044
REFSEQ:
NP_415830
SMR:
P76044
UNIPROT:
P76044


Operon      
Name: ycjMNOPQRSTUV-ymjB-ompG         
Operon arrangement:
Transcription unit        Promoter
ompG
ycjMNOPQRSTUV-ymjB-ompG


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References



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