RegulonDB RegulonDB 10.10: Gene Form
   

ycjV gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ycjV ompG ycjU ymjB ycjT terminator

Gene      
Name: ycjV    Texpresso search in the literature
Synonym(s): ECK1313, G6656, b1318
Type: Pseudo Gene
Genome position(nucleotides): 1380821 --> 1381789 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 50.57
External database links:  
ASAP:
 ABE-0004422
ECHOBASE:
 EB3678
ECOLIHUB:
 ycjV
OU-MICROARRAY:
 b1318
STRING:
 316407.1742155
COLOMBOS: ycjV


Product      
Name: putative ABC transporter ATP-binding protein YcjV
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 8.404
Motif(s):
 
Type Positions Sequence
4 -> 235 LSLQHIQKIYDNQVHVVKDFNLEIADKEFIVFVGPSGCGKSTTLRMIAGLEEISGGDLLIDGKRMNDVPAKARNIAMVFQNYALYPHMTVYDNMAFGLKMQKIAKEVIDERVNWAAQILGLREYLKRKPGALSGGQRQRVALGRAIVREAGVFLMDEPLSNLDAKLRVQMRAEISKLHQKLNTTMIYVTHDQTEAMTMATRIVIMKDGIVQQVGAPKTVYNQPANMFVSGFI
37 -> 44 GPSGCGKS

 
Classification:
Multifun Terms (GenProtEC)  
  4 - transport --> 4.3 - Primary Active Transporters --> 4.3.A - Pyrophosphate Bond (ATP; GTP; P2) Hydrolysis-driven Active Transporters --> 4.3.A.1 - The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases --> 4.3.A.1.a - ABC superfamily ATP binding cytoplasmic component
Gene Ontology Terms (GO)  
cellular_component GO:0043190 - ATP-binding cassette (ABC) transporter complex
Note(s): Note(s): ...[more].
External database links:  
DIP:
 DIP-11613N
ECOCYC:
 YCJV-MONOMER
ECOLIWIKI:
 b1318
INTERPRO:
 IPR003593
INTERPRO:
 IPR008995
INTERPRO:
 IPR003439
INTERPRO:
 IPR013611
INTERPRO:
 IPR027417
INTERPRO:
 IPR017871
MODBASE:
 P77481
PFAM:
 PF08402
PFAM:
 PF00005
PRIDE:
 P77481
PROSITE:
 PS00211
PROSITE:
 PS50893
SMART:
 SM00382
SMR:
 P77481
SWISSMODEL:
 P77481
UNIPROT:
 P77481


Operon      
Name: ycjMNOPQRSTUV-ymjB-ompG         
Operon arrangement:
Transcription unit        Promoter
ompG
ycjMNOPQRSTUV-ymjB-ompG


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References



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