Gene
Name:	ycjG
Synonym(s):	ECK1321, G6661, b1325, ycjH
Genome position(nucleotides):	1388930 --> 1389895 Genome Browser
Strand:	forward
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	54.66
Reference(s):	[1] Schmidt DM., et al., 2001
External database links:

ASAP:	ABE-0004448
ECHOBASE:	EB3018
ECOLIHUB:	ycjG
OU-MICROARRAY:	b1325
STRING:	511145.b1325
COLOMBOS:	ycjG

Type	Name	Post Left	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
promoter	TSS_1748 (cluster)	1388610	reverse	For this promoter, there is a cluster of 2 transcription start sites,in the interval 1388609 to 1388610, where the highest frequency is at position 1386634. The most upstream position of this cluster is assigned as TSS position in the promoter. Read more >	[RS-EPT-CBR]	[3]
promoter	TSS_1749	1388656	reverse	nd	[RS-EPT-CBR]	[3]
promoter	TSS_1750	1390618	reverse	nd	[RS-EPT-CBR]	[3]
promoter	TSS_1751	1390623	reverse	nd	[RS-EPT-CBR]	[3]
promoter	mpaAp2	1390637	reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: good homology. Score: 3.24. P-value: 9.234e-5 Read more >	[ICWHO]	[4]
promoter	mpaAp4	1390639	reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: poor homology. Score: 3.789. P-value: 6.443e-5 Read more >	[ICWHO]	[4]
promoter	mpaAp4	1390639	reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: poor homology. Score: 3.789. P-value: 6.443e-5 Read more >	[ICWHO]	[4]
promoter	TSS_1752	1390681	reverse	nd	[RS-EPT-CBR]	[3]

Evidence
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates
[ICWHO] Inferred computationally without human oversight

Reference(s)
[1] Schmidt DM., Hubbard BK., Gerlt JA., 2001, Evolution of enzymatic activities in the enolase superfamily: functional assignment of unknown proteins in Bacillus subtilis and Escherichia coli as L-Ala-D/L-Glu epimerases., Biochemistry 40(51):15707-15
[2] Vick JE., Gerlt JA., 2007, Evolutionary potential of (beta/alpha)8-barrels: stepwise evolution of a "new" reaction in the enolase superfamily., Biochemistry 46(50):14589-97
[3] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.
[4] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

Transcriptional Regulation
	Display Regulation
Repressed by:	PgrR