RegulonDB RegulonDB 10.9: Gene Form
   

rzpR gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

trkG ydaW rzpR rzoR b1364 ynaKp10 ynaKp10 trkGp8 trkGp8 trkGp1 trkGp1 trkGp7 trkGp7

Gene      
Name: rzpR    Texpresso search in the literature
Synonym(s): ECK1360, G6686, b1362, ydaX
Type: Pseudo Gene
Genome position(nucleotides): 1423345 --> 1423644 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
53.33
External database links:  
ASAP:
ABE-0004564
ECHOBASE:
EB3149
ECOLIHUB:
rzpR
ECOO157CYC:
Z1354
ECOO157CYC:
Z3336
ECOO157CYC:
Z3101
ECOO157CYC:
Z0961
ECOO157CYC:
Z1798
ECOO157CYC:
Z1877
ECOO157CYC:
Z2118
ECOO157CYC:
Z2369
OU-MICROARRAY:
b1362
STRING:
316407.85674926
COLOMBOS: rzpR


Product      
Name: Rac prophage; putative endopeptidase RzpR
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 7.263
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
G6686-MONOMER
ECOLIWIKI:
b1362
ECOO157CYC:
Z1354-MONOMER
ECOO157CYC:
Z3336-MONOMER
ECOO157CYC:
Z3101-MONOMER
ECOO157CYC:
Z2369-MONOMER
ECOO157CYC:
Z2118-MONOMER
ECOO157CYC:
Z0961-MONOMER
ECOO157CYC:
Z1798-MONOMER
ECOO157CYC:
Z1877-MONOMER
INTERPRO:
IPR004929
PFAM:
PF03245
PRIDE:
P77551
REFSEQ:
NP_415880
UNIPROT:
P77551


Operon      
Name: ydaSTUVW-rzpR         
Operon arrangement:
Transcription unit        Promoter
ydaSTUVW-rzpR


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter trkGp7 1423671 forward Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter trkGp1 1423741 forward Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter trkGp8 1423749 forward Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter ynaKp10 1425219 forward Similarity to the consensus
Read more >
[ICWHO] [1]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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