RegulonDB RegulonDB 10.10: Gene Form
   

ydaY gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ynaA ydaY b1364 ynaK unknown trkG terminator terminator ynaKp4 ynaKp4 ynaKp8 ynaKp8 ynaKp6 ynaKp6 ynaKp10 ynaKp10

Gene      
Name: ydaY    Texpresso search in the literature
Synonym(s): ECK1364, G6689, b1366
Genome position(nucleotides): 1425621 --> 1425980 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 47.22
External database links:  
ASAP:
 ABE-0004574
ECHOBASE:
 EB3150
ECOLIHUB:
 ydaY
OU-MICROARRAY:
 b1366
STRING:
 316407.85674929
COLOMBOS: ydaY


Product      
Name: Rac prophage; putative uncharacterized protein YdaY
Synonym(s): YdaY
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 13.473
Isoelectric point: 5.258
Classification:
Multifun Terms (GenProtEC)  
  8 - extrachromosomal --> 8.1 - prophage genes and phage related functions
Gene Ontology Terms (GO)  
molecular_function GO:0005515 - protein binding
Note(s): Note(s): ...[more].
External database links:  
DIP:
 DIP-11630N
ECOCYC:
 G6689-MONOMER
ECOLIWIKI:
 b1366
PRIDE:
 P76069
REFSEQ:
 NP_415884
UNIPROT:
 P76069


Operon      
Name: ynaK-ydaY         
Operon arrangement:
Transcription unit        Promoter
ynaK-ydaY


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter ynaKp10 1425219 forward nd [ICWHO] [1]
  promoter ynaKp6 1425249 forward nd [ICWHO] [1]
  promoter ynaKp8 1425264 forward nd [ICWHO] [1]
  promoter ynaKp4 1425313 forward nd [ICWHO] [1]
  translational_attenuator terminator 1426408 1426431 forward nd [ICA] [2]


Evidence    

 [ICWHO] Inferred computationally without human oversight

 [ICA] Inferred by computational analysis


Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [2] Merino E, Yanofsky C., 2005, Transcription attenuation: a highly conserved regulatory strategy used by bacteria., Trends Genet. 2005 May;21(5):260-4.

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