RegulonDB

Gene
Name:	ydaY
Synonym(s):	ECK1364, G6689, b1366
Genome position(nucleotides):	1425621 --> 1425980 Genome Browser
Strand:	forward
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	47.22
External database links:

ASAP:	ABE-0004574
ECHOBASE:	EB3150
ECOLIHUB:	ydaY
OU-MICROARRAY:	b1366
STRING:	316407.85674929
COLOMBOS:	ydaY

Product

Name:

Rac prophage; putative uncharacterized protein YdaY

Synonym(s):

YdaY

Sequence:

Get amino acid sequence Fasta Format

Molecular weight:

13.473

Isoelectric point:

5.258

Classification:

Multifun Terms (GenProtEC)
Multifun Terms (GenProtEC)		8 - extrachromosomal --> 8.1 - prophage genes and phage related functions
Gene Ontology Terms (GO)
Gene Ontology Terms (GO)	molecular_function	GO:0005515 - protein binding

Note(s):

Note(s): ...[more].

External database links:

DIP:

ECOCYC:

ECOLIWIKI:

PRIDE:

REFSEQ:

UNIPROT:

Operon

Name:

ynaK-ydaY

Operon arrangement:

Transcription unit	Promoter
ynaK-ydaY

Elements in the selected gene context region unrelated to any object in RegulonDB

Type	Name	Post Left	Post Right	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
promoter	ynaKp10	1425219		forward	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 5.38. P-value: 1.926e-6 Read more >	[ICWHO]	[1]
promoter	ynaKp6	1425249		forward	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 4.123. P-value: 6.443e-5 Read more >	[ICWHO]	[1]
promoter	ynaKp8	1425264		forward	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 4.394. P-value: 8.985e-6 Read more >	[ICWHO]	[1]
promoter	ynaKp4	1425313		forward	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: good homology. Score: 3.83. P-value: 3.297e-5 Read more >	[ICWHO]	[1]
translational_attenuator	terminator	1426408	1426431	forward	nd	[ICA]	[2]

Evidence
[ICWHO] Inferred computationally without human oversight
[ICA] Inferred by computational analysis

Reference(s)
[1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78
[2] Merino E, Yanofsky C., 2005, Transcription attenuation: a highly conserved regulatory strategy used by bacteria., Trends Genet. 2005 May;21(5):260-4.