RegulonDB

Gene
Name:	ynbE
Synonym(s):	ECK1379, G6704, b1382
Genome position(nucleotides):	1445687 --> 1445872
Strand:	forward
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	43.01
External database links:

ASAP:	ABE-0004625
ECHOBASE:	EB4045
ECOLIHUB:	ynbE
OU-MICROARRAY:	b1382
STRING:	511145.b1382
COLOMBOS:	ynbE

Product

Name:

lipoprotein YnbE

Synonym(s):

YnbE

Sequence:

Get amino acid sequence Fasta Format

Cellular location:

cytosol

Molecular weight:

6.84

Isoelectric point:

4.66

Motif(s):

Type	Positions	Sequence	Comment
	26 -> 59	PKEPITINMNVKIEHEIIIKADKDVEELLETRSD

Classification:

Note(s):

Note(s): ...[more].

Reference(s):

[1] Murata M., et al., 2011
[2] Rao S., et al., 2020

External database links:

ALPHAFOLD:

ECOCYC:

ECOLIWIKI:

INTERPRO:

PFAM:

PRIDE:

REFSEQ:

UNIPROT:

Operon

Name:

ydbH-ynbE-ydbL

Operon arrangement:

Transcription unit	Promoter
ydbH-ynbE-ydbL

Elements in the selected gene context region unrelated to any object in RegulonDB

	Type	Name	Post Left	Post Right	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
	promoter	ydbHp9	1442900		forward	nd	[COMP-AINF]	[3]
	promoter	TSS_1789	1445572		forward	nd	[RS-EPT-CBR]	[4]

Evidence
[COMP-AINF] Inferred computationally without human oversight
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

Reference(s)
[1] Murata M., Fujimoto H., Nishimura K., Charoensuk K., Nagamitsu H., Raina S., Kosaka T., Oshima T., Ogasawara N., Yamada M., 2011, Molecular strategy for survival at a critical high temperature in Eschierichia coli., PLoS One 6(6):e20063
[2] Rao S., Bates GT., Matthews CR., Newport TD., Vickery ON., Stansfeld PJ., 2020, Characterizing Membrane Association and Periplasmic Transfer of Bacterial Lipoproteins through Molecular Dynamics Simulations., Structure 28(4):475-487.e3
[3] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78
[4] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.