RegulonDB RegulonDB 11.1: Gene Form
   

paaD gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

paaE paaC paaD paaF

Gene      
Name: paaD    Texpresso search in the literature
Synonym(s): ECK1388, G6712, b1391, ydbQ
Genome position(nucleotides): 1455925 --> 1456422
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 55.82
External database links:  
ASAP:
 ABE-0004655
ECHOBASE:
 EB3501
ECOLIHUB:
 paaD
OU-MICROARRAY:
 b1391
STRING:
 511145.b1391
COLOMBOS: paaD


Product      
Name: phenylacetate degradation protein
Synonym(s): PaaD, YdbQ
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 18.324
Isoelectric point: 5.906
Motif(s):
 
Type Positions Sequence Comment
14 -> 74 EIWALLSQIPDPEIPVLTITDLGMVRNVTQMGEGWVIGFTPTYSGCPATEHLIGAIREAMT
47 -> 47 G UniProt: In strain: W..
76 -> 76 N UniProt: In strain: W..
106 -> 106 E UniProt: In strain: W..

 
Classification:
Multifun Terms (GenProtEC)  
  1 - metabolism --> 1.1 - carbon utilization --> 1.1.1 - carbon compounds
Gene Ontology Terms (GO)  
biological_process GO:0010124 - phenylacetate catabolic process
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 P76080
ECOCYC:
 G6712-MONOMER
ECOLIWIKI:
 b1391
INTERPRO:
 IPR002744
INTERPRO:
 IPR011883
INTERPRO:
 IPR034904
PFAM:
 PF01883
PRIDE:
 P76080
PRODB:
 PRO_000023478
REFSEQ:
 NP_415909
SMR:
 P76080
UNIPROT:
 P76080


Operon      
Name: paaABCDEFGHIJK         
Operon arrangement:
Transcription unit        Promoter
paaABCDEFGHIJK
paaJ
paaJ
paaJ


Transcriptional Regulation      
Display Regulation             
Activated by: CRP, SlyA, IHF
Repressed by: PaaX


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References



RegulonDB