RegulonDB RegulonDB 10.9: Gene Form
   

yncE gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yncD ansP yncE MarA yncDp11 yncDp11 yncEp yncEp

Gene      
Name: yncE    Texpresso search in the literature
Synonym(s): ECK1446, G6763, b1452
Genome position(nucleotides): 1523307 --> 1524368 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
50.66
External database links:  
ASAP:
ABE-0004843
ECHOBASE:
EB3537
ECOLIHUB:
yncE
OU-MICROARRAY:
b1452
STRING:
511145.b1452
COLOMBOS: yncE


Product      
Name: PQQ-like domain-containing protein YncE
Synonym(s): YncE
Sequence: Get amino acid sequence Fasta Format
Cellular location: periplasmic space
Molecular weight: 38.613
Isoelectric point: 9.794
Motif(s):
 
Type Positions Sequence
31 -> 353 AEEMLRKAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQKSTKQQEATQPDDVIRIAL
1 -> 30 MHLRHLFSSRLRGSLLLGSLLVVSSFSTQA

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0030288 - outer membrane-bounded periplasmic space
molecular_function GO:0003677 - DNA binding
Note(s): Note(s): ...[more].
Reference(s): [1] Moriel DG., et al., 2016
[2] Pattrick CA., et al., 2019
External database links:  
DIP:
DIP-28079N
ECOCYC:
G6763-MONOMER
ECOLIWIKI:
b1452
INTERPRO:
IPR015943
INTERPRO:
IPR011048
MODBASE:
P76116
PDB:
3VH0
PDB:
3VGZ
PRIDE:
P76116
REFSEQ:
NP_415969
SMR:
P76116
UNIPROT:
P76116


Operon      
Name: yncE         
Operon arrangement:
Transcription unit        Promoter
yncE


Transcriptional Regulation      
Display Regulation             
Activated by: MarA


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter yncDp11 1523276 reverse Similarity to the consensus
Read more >
[ICWHO] [3]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Moriel DG., Tan L., Goh KG., Phan MD., Ipe DS., Lo AW., Peters KM., Ulett GC., Beatson SA., Schembri MA., 2016, A Novel Protective Vaccine Antigen from the Core Escherichia coli Genome., mSphere 1(6)

 [2] Pattrick CA., Webb JP., Green J., Chaudhuri RR., Collins MO., Kelly DJ., 2019, Proteomic Profiling, Transcription Factor Modeling, and Genomics of Evolved Tolerant Strains Elucidate Mechanisms of Vanillin Toxicity in Escherichia coli., mSystems 4(4)

 [3] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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