RegulonDB RegulonDB 10.9: Gene Form
   

yddK gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

narU yddK yddJ yddL yddJp1 yddJp1 yddJp6 yddJp6 yddJp5 yddJp5 yddJp9 yddJp9 yddJp8 yddJp8 narUp2 narUp2 narUp1 narUp1 narZp narZp

Gene      
Name: yddK    Texpresso search in the literature
Synonym(s): ECK1465, G6772, b1471
Genome position(nucleotides): 1544758 <-- 1545714 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
32.18
External database links:  
ASAP:
ABE-0004906
ECHOBASE:
EB3544
ECOLIHUB:
yddK
ECOO157CYC:
Z2240
ECOO157CYC:
Z2241
ECOO157CYC:
Z2242
OU-MICROARRAY:
b1471
STRING:
316407.85674981
COLOMBOS: yddK


Product      
Name: leucine-rich repeat domain-containing protein YddK
Synonym(s): YddK
Sequence: Get amino acid sequence Fasta Format
Cellular location: extracellular space
Molecular weight: 36.241
Isoelectric point: 6.313
Motif(s):
 
Type Positions Sequence
217 -> 237 LLLLDLSHNKLTSLHNDLFPN
238 -> 258 LNTLLINNNLLSEIKIFYSNF
284 -> 305 SIKSLRLDNNKITHIDTNNTSD
195 -> 216 WLQYLNLSHNQLTDIVAGNKNE
260 -> 280 NVQTLNAANNQLKYINLDFLT

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005576 - extracellular region
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
G6772-MONOMER
ECOLIWIKI:
b1471
ECOO157CYC:
Z2242-MONOMER
ECOO157CYC:
Z2241-MONOMER
ECOO157CYC:
Z2240-MONOMER
INTERPRO:
IPR001611
INTERPRO:
IPR032675
MODBASE:
P76123
PRIDE:
P76123
PROSITE:
PS51450
REFSEQ:
NP_415988
UNIPROT:
P76123


Operon      
Name: yddLKJ         
Operon arrangement:
Transcription unit        Promoter
yddLKJ


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter narZp 1542690 reverse Rpos has been proved to
Read more >
[AIPP], [ICWHO] [1]
  promoter yddJp8 1544758 reverse Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter yddJp9 1544763 reverse Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter yddJp5 1544825 reverse Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter yddJp6 1544851 reverse Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter yddJp1 1544866 reverse Similarity to the consensus
Read more >
[ICWHO] [1]


Evidence    

 [AIPP] Automated inference of promoter position

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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