RegulonDB

Gene
Name:	bdm
Synonym(s):	ECK1475, G6776, b1481, yddX
Genome position(nucleotides):	1556065 <-- 1556280 Genome Browser
Strand:	reverse
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	45.37
External database links:

ASAP:	ABE-0004938
ECHOBASE:	EB4048
ECOL199310CYC:	C1914
ECOLIHUB:	bdm
OU-MICROARRAY:	b1481
STRING:	511145.b1481
COLOMBOS:	bdm

Product

Name:

biofilm-dependent modulation protein

Synonym(s):

Bdm, YddX, f92

Sequence:

Get amino acid sequence Fasta Format

Molecular weight:

7.987

Isoelectric point:

3.821

Motif(s):

Type	Positions	Sequence
	1 -> 71	MFTYYQAENSTAEPALVNAIEQGLRAQHGVVTEDDILMELTKWVEASDNDILSDIYQQTINYVVSGQHPTL

Classification:

Multifun Terms (GenProtEC)
Multifun Terms (GenProtEC)		5 - cell processes --> 5.3 - motility, chemotaxis, energytaxis (aerotaxis, redoxtaxis etc)
Gene Ontology Terms (GO)
Gene Ontology Terms (GO)	biological_process	GO:1902210 - positive regulation of bacterial-type flagellum assembly

Note(s):

Note(s): ...[more].

Evidence:

[IMP] Inferred from mutant phenotype

Reference(s):

[1] Hersch SJ., et al., 2020
[2] Kim JS., et al., 2015
[3] Kim K., et al., 2011

External database links:

ECOCYC:

ECOLIWIKI:

INTERPRO:

PFAM:

PRIDE:

PRODB:

REFSEQ:

UNIPROT:

Operon

Name:

bdm-sra

Operon arrangement:

Transcription unit	Promoter
sra	srap
bdm-sra	bdmp

Transcriptional Regulation
	Display Regulation
Activated by:	RcsB

Elements in the selected gene context region unrelated to any object in RegulonDB

	Type	Name	Post Left	Post Right	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
	promoter	TSS_1833	1556600		forward	nd	[RS-EPT-CBR]	[4]

Evidence
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

Reference(s)
[1] Hersch SJ., Watanabe N., Stietz MS., Manera K., Kamal F., Burkinshaw B., Lam L., Pun A., Li M., Savchenko A., Dong TG., 2020, Envelope stress responses defend against type six secretion system attacks independently of immunity proteins., Nat Microbiol 5(5):706-714
[2] Kim JS., Kim YJ., Seo S., Seong MJ., Lee K., 2015, Functional role of bdm during flagella biogenesis in Escherichia coli., Curr Microbiol 70(3):369-73
[3] Kim K., Sim SH., Jeon CO., Lee Y., Lee K., 2011, Base substitutions at scissile bond sites are sufficient to alter RNA-binding and cleavage activity of RNase III., FEMS Microbiol Lett 315(1):30-7
[4] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.