RegulonDB RegulonDB 11.1: Gene Form
   

ddpD gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ddpB ddpD ddpF ddpC osmC

Gene      
Name: ddpD    Texpresso search in the literature
Synonym(s): ECK1478, G6778, b1484, yddP
Genome position(nucleotides): 1558031 <-- 1559017
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 54.1
External database links:  
ASAP:
 ABE-0004949
ECHOBASE:
 EB3548
ECOLIHUB:
 ddpD
OU-MICROARRAY:
 b1484
STRING:
 511145.b1484
COLOMBOS: ddpD


Product      
Name: putative D,D-dipeptide ABC transporter ATP-binding subunit DdpD
Synonym(s): DdpD, YddP
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 36.1
Isoelectric point: 7.102
Motif(s):
 
Type Positions Sequence Comment
6 -> 257 LDIQQLHLSFPGFNGDVHALNNVSLQINRGEIVGLVGESGSGKSVTAMLIMRLLPTGSYCVHRGQISLLGEDVLNAREKQLRQWRGARVAMIFQEPMTALNPTRRIGLQMMDVIRHHQPISRREARAKAIDLLEEMQIPDAVEVMSRYPFELSGGMRQRVMIALAFSCEPQLIIADEPTTALDVTVQLQVLRLLKHKARASGTAVLFISHDMAVVSQLCDSVYVMYAGSVIESGVTADVIHHPRHPYTIGLL UniProt: ABC transporter.
25 -> 184 LNNVSLQINRGEIVGLVGESGSGKSVTAMLIMRLLPTGSYCVHRGQISLLGEDVLNAREKQLRQWRGARVAMIFQEPMTALNPTRRIGLQMMDVIRHHQPISRREARAKAIDLLEEMQIPDAVEVMSRYPFELSGGMRQRVMIALAFSCEPQLIIADEPT
42 -> 49 GESGSGKS UniProt: ATP.
157 -> 160 LSGG
177 -> 183 LIIADEP

 
Classification:
Multifun Terms (GenProtEC)  
  4 - transport --> 4.3 - Primary Active Transporters --> 4.3.A - Pyrophosphate Bond (ATP; GTP; P2) Hydrolysis-driven Active Transporters --> 4.3.A.1 - The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases --> 4.3.A.1.a - ABC superfamily ATP binding cytoplasmic component
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0043190 - ATP-binding cassette (ABC) transporter complex
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing
molecular_function GO:0000166 - nucleotide binding
GO:0005524 - ATP binding
biological_process GO:0015031 - protein transport
GO:0015833 - peptide transport
GO:0042938 - dipeptide transport
GO:0055085 - transmembrane transport
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 P77268
DIP:
 DIP-11669N
ECOCYC:
 YDDP-MONOMER
ECOLIWIKI:
 b1484
INTERPRO:
 IPR003593
INTERPRO:
 IPR003439
INTERPRO:
 IPR017871
INTERPRO:
 IPR027417
INTERPRO:
 IPR013563
MODBASE:
 P77268
PFAM:
 PF00005
PFAM:
 PF08352
PRIDE:
 P77268
PROSITE:
 PS50893
PROSITE:
 PS00211
REFSEQ:
 NP_416001
SMART:
 SM00382
SMR:
 P77268
UNIPROT:
 P77268


Operon      
Name: ddpXABCDF         
Operon arrangement:
Transcription unit        Promoter
ddpXABCDF
ddpXABCDF
ddpXABCDF


Transcriptional Regulation      
Display Regulation             
Activated by: NtrC


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References



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