RegulonDB RegulonDB 11.1: Gene Form
   

ddpC gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ddpA ddpB ddpD ddpF ddpC

Gene      
Name: ddpC    Texpresso search in the literature
Synonym(s): ECK1479, G6779, b1485, yddQ
Genome position(nucleotides): 1559014 <-- 1559910
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 53.07
External database links:  
ASAP:
 ABE-0004953
ECHOBASE:
 EB3549
ECOLIHUB:
 ddpC
OU-MICROARRAY:
 b1485
STRING:
 511145.b1485
COLOMBOS: ddpC


Product      
Name: putative D,D-dipeptide ABC transporter membrane subunit DdpC
Synonym(s): DdpC, YddQ
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 31.971
Isoelectric point: 9.999
Motif(s):
 
Type Positions Sequence Comment
26 -> 70 MLKGSPLTVTSAVIIVLMLLMMIFSPWLATHDPNAIDLTARLLPP
34 -> 54 VTSAVIIVLMLLMMIFSPWLA UniProt: Helical.
97 -> 282 ILAGLVVVAIAGMIGSLLGCLSGVLGGRADAIIMRIMDIMLSIPSLVLTMALAAALGPSLFNAMLAIAIVRIPFYVRLARGQALVVRQYTYVQAAKTFGASRWHLINWHILRNSLPPLIVQASLDIGSAILMAATLGFIGLGAQQPSAEWGAMVANGRNYVLDQWWYCAFPGAAILLTAVGFNLFG UniProt: ABC transmembrane type-1.
111 -> 292 GSLLGCLSGVLGGRADAIIMRIMDIMLSIPSLVLTMALAAALGPSLFNAMLAIAIVRIPFYVRLARGQALVVRQYTYVQAAKTFGASRWHLINWHILRNSLPPLIVQASLDIGSAILMAATLGFIGLGAQQPSAEWGAMVANGRNYVLDQWWYCAFPGAAILLTAVGFNLFGDGIRDLLDPK
125 -> 145 ADAIIMRIMDIMLSIPSLVLT UniProt: Helical.

 
Classification:
Multifun Terms (GenProtEC)  
  6 - cell structure --> 6.1 - membrane
  4 - transport --> 4.3 - Primary Active Transporters --> 4.3.A - Pyrophosphate Bond (ATP; GTP; P2) Hydrolysis-driven Active Transporters --> 4.3.A.1 - The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases --> 4.3.A.1.m - ABC superfamily, membrane component
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0005887 - integral component of plasma membrane
GO:0016021 - integral component of membrane
GO:0043190 - ATP-binding cassette (ABC) transporter complex
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing
molecular_function GO:0071916 - dipeptide transmembrane transporter activity
biological_process GO:0015031 - protein transport
GO:0015833 - peptide transport
GO:0042938 - dipeptide transport
GO:0055085 - transmembrane transport
GO:0035442 - dipeptide transmembrane transport
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 P77463
ECOCYC:
 YDDQ-MONOMER
ECOLIWIKI:
 b1485
INTERPRO:
 IPR025966
INTERPRO:
 IPR000515
INTERPRO:
 IPR035906
PFAM:
 PF12911
PFAM:
 PF00528
PRIDE:
 P77463
PROSITE:
 PS50928
REFSEQ:
 NP_416002
UNIPROT:
 P77463


Operon      
Name: ddpXABCDF         
Operon arrangement:
Transcription unit        Promoter
ddpXABCDF
ddpXABCDF
ddpXABCDF


Transcriptional Regulation      
Display Regulation             
Activated by: NtrC


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References



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