RegulonDB RegulonDB 11.0: Gene Form
   

yneL gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

hipA ydeT yneL TSS_1836 TSS_1836

Gene      
Name: yneL    Texpresso search in the literature
Synonym(s): ECK1499, G6796, b1506
Type: Pseudo Gene
Genome position(nucleotides): 1590334 <-- 1590536
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 46.31
External database links:  
ASAP:
 ABE-0005019
ECHOBASE:
 EB4106
ECOLIHUB:
 yneL
OU-MICROARRAY:
 b1506
STRING:
 316407.85674996
COLOMBOS: yneL


Product      
Name: putative HTH-type transcriptional regulator YneL
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 6.504
Motif(s):
 
Type Positions Sequence Comment
1 -> 59 MSPLRYQKWLRLNEVRRQMLNEHYDVTTAAYAVGYESYPISVGNIRGCLESHPREILPG UniProt: HTH araC/xylS-type.
26 -> 49 VTTAAYAVGYESYPISVGNIRGCL UniProt: H-T-H motif.

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
Reference(s): [1] DeLisa MP., et al., 2001
[2] Spiteri D., et al., 2017
External database links:  
ALPHAFOLD:
 P76138
ECOCYC:
 G6796-MONOMER
ECOLIWIKI:
 b1506
INTERPRO:
 IPR018060
PRIDE:
 P76138
PROSITE:
 PS01124
REFSEQ:
 NP_416023
SMR:
 P76138
UNIPROT:
 P76138


Operon      
Name: yneL         
Operon arrangement:
Transcription unit        Promoter
yneL


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1836 1592159 reverse nd [RS-EPT-CBR] [3]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] DeLisa MP., Wu CF., Wang L., Valdes JJ., Bentley WE., 2001, DNA microarray-based identification of genes controlled by autoinducer 2-stimulated quorum sensing in Escherichia coli., J Bacteriol 183(18):5239-47

 [2] Spiteri D., Chot-Plassot C., Sclear J., Karatzas KA., Scerri C., Valdramidis VP., 2017, Ultrasound processing of liquid system(s) and its antimicrobial mechanism of action., Lett Appl Microbiol 65(4):313-318

 [3] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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