RegulonDB

RegulonDB RegulonDB 10.10: Gene Form

yneL gene in Escherichia coli K-12 genome

Gene local context to scale (view description)

Gene
Name:	yneL
Synonym(s):	ECK1499, G6796, b1506
Type:	Pseudo Gene
Genome position(nucleotides):	1590334 <-- 1590536 Genome Browser
Strand:	reverse
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	46.31
External database links:

ASAP:	ABE-0005019
ECHOBASE:	EB4106
ECOLIHUB:	yneL
OU-MICROARRAY:	b1506
STRING:	316407.85674996
COLOMBOS:	yneL

Product

Name:

putative HTH-type transcriptional regulator YneL

Sequence:

Get amino acid sequence Fasta Format

Isoelectric point:

6.504

Motif(s):

Type	Positions	Sequence
	1 -> 59	MSPLRYQKWLRLNEVRRQMLNEHYDVTTAAYAVGYESYPISVGNIRGCLESHPREILPG
	26 -> 49	VTTAAYAVGYESYPISVGNIRGCL

Classification:

Multifun Terms (GenProtEC)
Gene Ontology Terms (GO)

Note(s):

Note(s): ...[more].

Reference(s):

[1] DeLisa MP., et al., 2001
[2] Spiteri D., et al., 2017

External database links:

ECOCYC:

ECOLIWIKI:

INTERPRO:

PRIDE:

PROSITE:

REFSEQ:

SMR:

UNIPROT:

Operon

Name:

yneL

Operon arrangement:

Transcription unit	Promoter
yneL

Elements in the selected gene context region unrelated to any object in RegulonDB

	Type	Name	Post Left	Post Right	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
	promoter	TSS_1836	1592159		reverse	nd	[RS-EPT-CBR]	[3]

Evidence
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

Reference(s)
[1] DeLisa MP., Wu CF., Wang L., Valdes JJ., Bentley WE., 2001, DNA microarray-based identification of genes controlled by autoinducer 2-stimulated quorum sensing in Escherichia coli., J Bacteriol 183(18):5239-47
[2] Spiteri D., Chot-Plassot C., Sclear J., Karatzas KA., Scerri C., Valdramidis VP., 2017, Ultrasound processing of liquid system(s) and its antimicrobial mechanism of action., Lett Appl Microbiol 65(4):313-318
[3] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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