RegulonDB RegulonDB 11.0: Gene Form
   

yneK gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ydeA yneK yneJ ArcA ydeAp ydeAp yneKp5 yneKp5 yneKp6 yneKp6 TSS_1840 TSS_1840

Gene      
Name: yneK    Texpresso search in the literature
Synonym(s): ECK1520, G6813, b1527
Genome position(nucleotides): 1615763 --> 1616878
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 39.78
External database links:  
ASAP:
 ABE-0005100
ECHOBASE:
 EB3580
ECOLIHUB:
 yneK
OU-MICROARRAY:
 b1527
STRING:
 511145.b1527
COLOMBOS: yneK


Product      
Name: protein YneK
Synonym(s): YneK
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 42.841
Isoelectric point: 6.883
Motif(s):
 
Type Positions Sequence Comment
339 -> 371 KVTHEDLVKNRPRSPVRPPIPATAKTPDLPERH UniProt: Disordered; Sequence Annotation Type: region of interest.

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 P76150
ECOCYC:
 G6813-MONOMER
ECOLIWIKI:
 b1527
PRIDE:
 P76150
REFSEQ:
 NP_416044
UNIPROT:
 P76150


Operon      
Name: yneK         
Operon arrangement:
Transcription unit        Promoter
yneK


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1840 1614845 reverse nd [RS-EPT-CBR] [1]
  promoter yneKp6 1615550 forward nd [ICWHO] [2]
  promoter yneKp5 1615731 forward nd [ICWHO] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

RegulonDB