RegulonDB RegulonDB 11.1: Gene Form
   

stfQ gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

stfQ pinQ tfaQ nohA ynfO Fur Fur ynfOp1 ynfOp1 nohAp nohAp tfaQp6 tfaQp6

Gene      
Name: stfQ    Texpresso search in the literature
Synonym(s): ECK1540, G6821, b1547, ydfN
Genome position(nucleotides): 1634885 <-- 1635847
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 52.65
External database links:  
ASAP:
 ABE-0005168
ECHOBASE:
 EB3587
ECOLIHUB:
 ydfN
OU-MICROARRAY:
 b1547
STRING:
 511145.b1547
COLOMBOS: stfQ


Product      
Name: Qin prophage; putative prophage side tail fiber protein StfQ
Synonym(s): StfQ, YdfN
Sequence: Get amino acid sequence Fasta Format
Cellular location: extracellular space
Molecular weight: 32.902
Isoelectric point: 7.644
Motif(s):
 
Type Positions Sequence Comment
94 -> 140 GAPIPWPSDTVPSGYALMQGQTFDKSAYPKLAVAYPSGVIPDMRGWT
147 -> 213 SGRAVLSQEQDGIKSHTHSASASSTDLGTETTSSFDYGTKSTNNTGAHTHSISGTANSAGAHQHKSS UniProt: Disordered; Sequence Annotation Type: region of interest.
154 -> 213 QEQDGIKSHTHSASASSTDLGTETTSSFDYGTKSTNNTGAHTHSISGTANSAGAHQHKSS UniProt: Polar residues; Sequence Annotation Type: compositionally biased region.
157 -> 170 DGIKSHTHSASASS
189 -> 202 NNTGAHTHSISGTA

 
Classification:
Multifun Terms (GenProtEC)  
  8 - extrachromosomal --> 8.1 - prophage genes and phage related functions
Gene Ontology Terms (GO)  
cellular_component GO:0005576 - extracellular region
molecular_function GO:0005198 - structural molecule activity
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 P77515
DIP:
 DIP-10931N
ECOCYC:
 G6821-MONOMER
ECOLIWIKI:
 b1547
INTERPRO:
 IPR005003
INTERPRO:
 IPR011083
INTERPRO:
 IPR037053
MODBASE:
 P77515
PFAM:
 PF03335
PFAM:
 PF07484
PRIDE:
 P77515
PRODB:
 PRO_000023998
REFSEQ:
 NP_416065
SMR:
 P77515
UNIPROT:
 P77515


Operon      
Name: nohA-stfQ-tfaQ         
Operon arrangement:
Transcription unit        Promoter
nohA-stfQ-tfaQ


Transcriptional Regulation      
Display Regulation             
Repressed by: Fur


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter tfaQp6 1634956 reverse nd [COMP-AINF] [1]
  promoter ynfOp1 1636727 forward nd [COMP-AINF] [1]


Evidence    

 [COMP-AINF] Inferred computationally without human oversight


Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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