Gene
Name:	slyB
Synonym(s):	ECK1637, G6881, b1641
Genome position(nucleotides):	1719876 --> 1720343
Strand:	forward
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	51.28
External database links:

ASAP:	ABE-0005493
ECHOBASE:	EB3185
ECOLIHUB:	slyB
OU-MICROARRAY:	b1641
STRING:	511145.b1641
COLOMBOS:	slyB

Type	Name	Post Left	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
promoter	TSS_1917 (cluster)	1719631	reverse	nd	[RS-EPT-CBR]	[3]
promoter	anmKp9	1719673	reverse	nd	[COMP-AINF]	[4]
promoter	TSS_1918 (cluster)	1719751	forward	nd	[RS-EPT-CBR]	[3]
promoter	TSS_1919	1719770	forward	nd	[RS-EPT-CBR]	[3]
promoter	TSS_1921	1719780	forward	nd	[RS-EPT-CBR]	[3]
promoter	TSS_1922	1719799	forward	nd	[RS-EPT-CBR]	[3]
promoter	TSS_1923	1719807	forward	nd	[RS-EPT-CBR]	[3]
promoter	TSS_1924	1719829	forward	nd	[RS-EPT-CBR]	[3]
promoter	TSS_1925	1719831	forward	nd	[RS-EPT-CBR]	[3]
promoter	TSS_1926	1720091	forward	nd	[RS-EPT-CBR]	[3]

Evidence
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates
[COMP-AINF] Inferred computationally without human oversight

Reference(s)
[1] Maddalo G., Stenberg-Bruzell F., Gotzke H., Toddo S., Bjorkholm P., Eriksson H., Chovanec P., Genevaux P., Lehtio J., Ilag LL., Daley DO., 2011, Systematic analysis of native membrane protein complexes in Escherichia coli., J Proteome Res 10(4):1848-59
[2] Rao S., Bates GT., Matthews CR., Newport TD., Vickery ON., Stansfeld PJ., 2020, Characterizing Membrane Association and Periplasmic Transfer of Bacterial Lipoproteins through Molecular Dynamics Simulations., Structure 28(4):475-487.e3
[3] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.
[4] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

Transcriptional Regulation
	Display Regulation
Activated by:	PhoP
Repressed by:	PhoP