RegulonDB

Gene
Name:	ydiK
Synonym(s):	ECK1685, G6914, b1688
Genome position(nucleotides):	1769074 --> 1770186
Strand:	forward
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	54.9
External database links:

ASAP:	ABE-0005637
ECHOBASE:	EB3727
ECOLIHUB:	ydiK
OU-MICROARRAY:	b1688
STRING:	511145.b1688
COLOMBOS:	ydiK

Product

Name:

putative transporter YdiK

Synonym(s):

YdiK

Sequence:

Get amino acid sequence Fasta Format

Cellular location:

inner membrane

Molecular weight:

39.841

Isoelectric point:

8.478

Motif(s):

Type	Positions	Sequence	Comment
	15 -> 344	LSVLFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMVFIIPIALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIPVIGAKLYAGWHNLLDMGGTAIMAKVRPYIGTTTTWFVGQAAHIGRFMVHCALMLLFSALLYWRGEQVAQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSGVVGTLDNVIRPMLIRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAW
	18 -> 38	LFLAIMIVACLWIVQPFILGF	UniProt: Helical.
	40 -> 60	WAGTVVIATWPVLLRLQKIMF	UniProt: Helical.
	66 -> 86	AVLVMTLLLVMVFIIPIALLV	UniProt: Helical.
	107 -> 127	LPDLAWLNTIPVIGAKLYAGW	UniProt: Helical.

Classification:

Multifun Terms (GenProtEC)
Gene Ontology Terms (GO)
Gene Ontology Terms (GO)	cellular_component	GO:0016020 - membrane GO:0005886 - plasma membrane GO:0016021 - integral component of membrane

Note(s):

Note(s): ...[more].

Reference(s):

[1] Phan QT., et al., 2019

External database links:

ALPHAFOLD:

ECOCYC:

ECOLIWIKI:

INTERPRO:

PANTHER:

PFAM:

PRIDE:

REFSEQ:

UNIPROT:

Operon

Name:

ydiK

Operon arrangement:

Transcription unit	Promoter
ydiK

RNA cis-regulatory element

Attenuation:	Translational

Elements in the selected gene context region unrelated to any object in RegulonDB

	Type	Name	Post Left	Post Right	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
	promoter	TSS_1987	1767630		reverse	nd	[RS-EPT-CBR]	[2]
	promoter	TSS_1988	1768977		forward	nd	[RS-EPT-CBR]	[2]

Evidence
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

Reference(s)
[1] Phan QT., Phung LK., Truong KH., Huynh TT., Pháº¡m GT., Nguyen BN., Tran QT., Huynh VNT., Nguyen TTM., Le TPK., Le NNT., Sabanathan S., van Doorn HR., Van Le T., Nguyen TD., Merson L., Nguyen DTP., Geskus R., Nguyen HT., Nguyen CVV., Wills B., 2019, Assessing the efficacy and safety of magnesium sulfate for management of autonomic nervous system dysregulation in Vietnamese children with severe hand foot and mouth disease., BMC Infect Dis 19(1):737
[2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

Reference(s)

[1] Phan QT., Phung LK., Truong KH., Huynh TT., Pháº¡m GT., Nguyen BN., Tran QT., Huynh VNT., Nguyen TTM., Le TPK., Le NNT., Sabanathan S., van Doorn HR., Van Le T., Nguyen TD., Merson L., Nguyen DTP., Geskus R., Nguyen HT., Nguyen CVV., Wills B., 2019, Assessing the efficacy and safety of magnesium sulfate for management of autonomic nervous system dysregulation in Vietnamese children with severe hand foot and mouth disease., BMC Infect Dis 19(1):737

[2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.