RegulonDB RegulonDB 10.9: Gene Form
   

ydiK gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ydiJ ydiK rprA menI RcsB terminator anti-terminator anti-anti-terminator terminator rprAp rprAp TSS_1988 TSS_1988 TSS_1987 TSS_1987

Gene      
Name: ydiK    Texpresso search in the literature
Synonym(s): ECK1685, G6914, b1688
Genome position(nucleotides): 1769074 --> 1770186 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
54.9
External database links:  
ASAP:
ABE-0005637
ECHOBASE:
EB3727
ECOLIHUB:
ydiK
OU-MICROARRAY:
b1688
STRING:
511145.b1688
COLOMBOS: ydiK


Product      
Name: putative transporter YdiK
Synonym(s): YdiK
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 39.841
Isoelectric point: 8.478
Motif(s):
 
Type Positions Sequence
275 -> 295 TTWGTVLLVWSGVVGTLDNVI
66 -> 86 AVLVMTLLLVMVFIIPIALLV
249 -> 269 ILSCLVQLGPLPVLIPAIIWL
309 -> 329 ILILSGVIGGLIAFGMIGLFI
157 -> 177 AAHIGRFMVHCALMLLFSALL

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
Note(s): Note(s): ...[more].
Reference(s): [1] Phan QT., et al., 2019
External database links:  
ECOCYC:
G6914-MONOMER
ECOLIWIKI:
b1688
INTERPRO:
IPR002549
PANTHER:
PTHR21716
PFAM:
PF01594
PRIDE:
P0AFS7
REFSEQ:
NP_416203
UNIPROT:
P0AFS7


Operon      
Name: ydiK         
Operon arrangement:
Transcription unit        Promoter
ydiK


RNA cis-regulatory element    
Attenuation: Translational


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1987 1767630 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_1988 1768977 forward nd [RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Phan QT., Phung LK., Truong KH., Huynh TT., Phạm GT., Nguyen BN., Tran QT., Huynh VNT., Nguyen TTM., Le TPK., Le NNT., Sabanathan S., van Doorn HR., Van Le T., Nguyen TD., Merson L., Nguyen DTP., Geskus R., Nguyen HT., Nguyen CVV., Wills B., 2019, Assessing the efficacy and safety of magnesium sulfate for management of autonomic nervous system dysregulation in Vietnamese children with severe hand foot and mouth disease., BMC Infect Dis 19(1):737

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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