RegulonDB RegulonDB 11.1: Gene Form
   

ydiN gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ydiN ydiM ydiB aroDp aroDp ydiNp6 ydiNp6

Gene      
Name: ydiN    Texpresso search in the literature
Synonym(s): ECK1689, G6917, b1691
Genome position(nucleotides): 1772512 --> 1773777
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 45.34
External database links:  
ASAP:
 ABE-0005648
ECHOBASE:
 EB3730
ECOLIHUB:
 ydiN
OU-MICROARRAY:
 b1691
STRING:
 511145.b1691
COLOMBOS: ydiN


Product      
Name: putative transporter YdiN
Synonym(s): YdiN
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 46.08
Isoelectric point: 9.472
Motif(s):
 
Type Positions Sequence Comment
10 -> 30 PFILAVLCIYFSYFLHGISVI UniProt: Helical.
18 -> 356 IYFSYFLHGISVITLAQNMSSLAEKFSTDNAGIAYLISGIGLGRLISILFFGVISDKFGRRAVILMAVIMYLLFFFGIPACPNLTLAYGLAVCVGIANSALDTGGYPALMECFPKASGSAVILVKAMVSFGQMFYPMLVSYMLLNNIWYGYGLIIPGILFVLITLMLLKSKFPSQLVDASVTNELPQMNSKPLVWLEGVSSVLFGVAAFSTFYVIVVWMPKYAMAFAGMSEAEALKTISYYSMGSLVCVFIFAALLKKMVRPIWANVFNSALATITAAIIYLYPSPLVCNAGAFVIGFSAAGGILQLGVSVMSEFFPKSKAKVTSIYMMMGGLANFVIP
50 -> 70 IAYLISGIGLGRLISILFFGV UniProt: Helical.
79 -> 99 AVILMAVIMYLLFFFGIPACP UniProt: Helical.
101 -> 121 LTLAYGLAVCVGIANSALDTG UniProt: Helical.

 
Classification:
Multifun Terms (GenProtEC)  
  4 - transport --> 4.2 - Electrochemical potential driven transporters --> 4.2.A - Porters (Uni-, Sym- and Antiporters)
  6 - cell structure --> 6.1 - membrane
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
molecular_function GO:0015292 - uniporter activity
GO:0022857 - transmembrane transporter activity
biological_process GO:0055085 - transmembrane transport
Note(s): Note(s): ...[more].
Reference(s): [1] Phan QT., et al., 2019
External database links:  
ALPHAFOLD:
 P76198
ECOCYC:
 B1691-MONOMER
ECOLIWIKI:
 b1691
INTERPRO:
 IPR020846
INTERPRO:
 IPR011701
INTERPRO:
 IPR036259
MODBASE:
 P76198
PFAM:
 PF07690
PRIDE:
 P76198
PROSITE:
 PS50850
REFSEQ:
 NP_416206
UNIPROT:
 P76198


Operon      
Name: ydiNB-aroD         
Operon arrangement:
Transcription unit        Promoter
aroD
ydiNB-aroD


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter ydiNp6 1772409 forward nd [COMP-AINF] [2]


Evidence    

 [COMP-AINF] Inferred computationally without human oversight


Reference(s)    

 [1] Phan QT., Phung LK., Truong KH., Huynh TT., Phạm GT., Nguyen BN., Tran QT., Huynh VNT., Nguyen TTM., Le TPK., Le NNT., Sabanathan S., van Doorn HR., Van Le T., Nguyen TD., Merson L., Nguyen DTP., Geskus R., Nguyen HT., Nguyen CVV., Wills B., 2019, Assessing the efficacy and safety of magnesium sulfate for management of autonomic nervous system dysregulation in Vietnamese children with severe hand foot and mouth disease., BMC Infect Dis 19(1):737

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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