RegulonDB

Gene
Name:	arpB
Synonym(s):	ECK1718, G6926, b1720, b1721, b4494, ydiW, ydiX
Type:	Pseudo Gene
Genome position(nucleotides):	1803094 --> 1804993 Genome Browser
Strand:	forward
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	39.05
External database links:

ASAP:	ABE-0005740
ASAP:	ABE-0005742
ASAP:	ABE-0285095
ECOLIHUB:	arpB_1
ECOLIHUB:	arpB_2
OU-MICROARRAY:	b1720
OU-MICROARRAY:	b1721
UNIPROT:	P76205
COLOMBOS:	arpB

Product

Name:

putative ankyrin repeat protein B, N-terminal fragment

Sequence:

Get amino acid sequence Fasta Format

Isoelectric point:

9.648

Motif(s):

Type	Positions	Sequence
	1 -> 157	MSQNDIIIRTHYKSPHRLHIDSDIPTPSSEPINQFARQLITLLDTSDLSSMLSYCVTQEFTANCRKISQNCYSTALFTINFATSPIHTENILITLHYKKEIISLLLETTPIKANHLRSILDYIEQEQLTAEDRNHCMKLSKKIHREKNYTPNSKSQW

Classification:

Multifun Terms (GenProtEC)
Gene Ontology Terms (GO)

Note(s):

Note(s): ...[more].

External database links:

DIP:

ECOCYC:

ECOLIWIKI:

INTERPRO:

INTERPRO:

PRIDE:

PROSITE:

PROSITE:

SMART:

SMR:

UNIPROT:

Operon

Name:

arpB

Operon arrangement:

Transcription unit	Promoter
arpB

Elements in the selected gene context region unrelated to any object in RegulonDB

Type	Name	Post Left	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
promoter	TSS_2023	1800817	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2024	1800819	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2025 (cluster)	1801170	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2026	1801273	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2027	1801278	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2029	1801426	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2030	1801552	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2031	1801633	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2032	1802563	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2033 (cluster)	1802626	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2034	1802634	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2035	1802637	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2036	1802699	reverse	nd	[RS-EPT-CBR]	[1]
promoter	yniDp6	1805101	forward	nd	[ICWHO]	[2]

Evidence
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates
[ICWHO] Inferred computationally without human oversight

Reference(s)
[1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.
[2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

Reference(s)

[1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

[2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78