RegulonDB RegulonDB 10.9: Gene Form
   

ynjB gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ynjC ynjB ynjD ynjA

Gene      
Name: ynjB    Texpresso search in the literature
Synonym(s): ECK1752, G6949, b1754
Genome position(nucleotides): 1836073 --> 1837239 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
56.38
External database links:  
ASAP:
ABE-0005841
ECHOBASE:
EB3760
ECOLIHUB:
ynjB
OU-MICROARRAY:
b1754
STRING:
511145.b1754
COLOMBOS: ynjB


Product      
Name: putative ABC transporter periplasmic binding protein YnjB
Synonym(s): YnjB
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 42.845
Isoelectric point: 6.249
Motif(s):
 
Type Positions Sequence
62 -> 338 AINLKIVRLADAADAVKRIQTEAAAGRKTGGSVDLLWVNGENFRTLKEANLLQTGWAETLPNWRYVDTQLPVREDFSVPTQGAESPWGGAQLTFIARRDVTPQPPQTPQALLEFAKANPGTVTYPRPPDFTGTAFLEQLLIMLTPDPAALKEAPDDATFARVTAPLWQYLDVLHPYLWREGKDFPPSPARMDALLKAGTLRLSLTFNPAHAQQKIASGDLPASSYSFGFREGMIGNVHFVTIPANANASAAAKVVANFLLSPDAQLRKADPAVWGDP

 

Classification:
Multifun Terms (GenProtEC)  
  4 - transport --> 4.3 - Primary Active Transporters --> 4.3.A - Pyrophosphate Bond (ATP; GTP; P2) Hydrolysis-driven Active Transporters --> 4.3.A.1 - The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases --> 4.3.A.1.p - ABC superfamily, periplasmic binding component
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
Reference(s): [1] Jindal S., et al., 2019
External database links:  
DIP:
DIP-12779N
ECOCYC:
G6949-MONOMER
ECOLIWIKI:
b1754
INTERPRO:
IPR006059
INTERPRO:
IPR027020
MODBASE:
P76223
PFAM:
PF13416
PRIDE:
P76223
REFSEQ:
NP_416268
UNIPROT:
P76223


Operon      
Name: ydjXYZ-ynjABCD         
Operon arrangement:
Transcription unit        Promoter
ydjXYZ-ynjABCD


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Jindal S., Yang L., Day PJ., Kell DB., 2019, Involvement of multiple influx and efflux transporters in the accumulation of cationic fluorescent dyes by Escherichia coli., BMC Microbiol 19(1):195


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