RegulonDB RegulonDB 10.9: Gene Form
   

ynjC gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ynjC ynjE ynjB ynjD ynjA ynjEp ynjEp

Gene      
Name: ynjC    Texpresso search in the literature
Synonym(s): ECK1753, G6950, b1755
Genome position(nucleotides): 1837212 --> 1838747 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
56.77
External database links:  
ASAP:
ABE-0005843
ECHOBASE:
EB3761
ECOLIHUB:
ynjC
OU-MICROARRAY:
b1755
STRING:
511145.b1755
COLOMBOS: ynjC


Product      
Name: putative ABC transporter membrane subunit YnjC
Synonym(s): YnjC
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 56.243
Isoelectric point: 9.955
Motif(s):
 
Type Positions Sequence
190 -> 210 LAMAMLAIVAWSLSVVDVAII
92 -> 112 LPWLLAIPHVAFATSALLLFA
319 -> 339 LTMGLVATFIALLLLLLWLEW
433 -> 453 VLIAFAVGFAVGIAQYMPTLW
9 -> 29 LIFLLWAMVAVIYAPLIPAAL

 

Classification:
Multifun Terms (GenProtEC)  
  6 - cell structure --> 6.1 - membrane
  4 - transport --> 4.3 - Primary Active Transporters --> 4.3.A - Pyrophosphate Bond (ATP; GTP; P2) Hydrolysis-driven Active Transporters --> 4.3.A.1 - The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases --> 4.3.A.1.m - ABC superfamily, membrane component
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
GO:0043190 - ATP-binding cassette (ABC) transporter complex
biological_process GO:0055085 - transmembrane transport
Note(s): Note(s): ...[more].
Reference(s): [1] Jindal S., et al., 2019
[2] Niba ET., et al., 2007
External database links:  
ECOCYC:
YNJC-MONOMER
ECOLIWIKI:
b1755
INTERPRO:
IPR000515
INTERPRO:
IPR035906
PFAM:
PF00528
PRIDE:
P76224
PROSITE:
PS50928
REFSEQ:
NP_416269
UNIPROT:
P76224


Operon      
Name: ydjXYZ-ynjABCD         
Operon arrangement:
Transcription unit        Promoter
ydjXYZ-ynjABCD


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Jindal S., Yang L., Day PJ., Kell DB., 2019, Involvement of multiple influx and efflux transporters in the accumulation of cationic fluorescent dyes by Escherichia coli., BMC Microbiol 19(1):195

 [2] Niba ET., Naka Y., Nagase M., Mori H., Kitakawa M., 2007, A genome-wide approach to identify the genes involved in biofilm formation in E. coli., DNA Res 14(6):237-46


RegulonDB