RegulonDB RegulonDB 10.9: Gene Form
   

ydjK gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ydjK ydjL ydjJ

Gene      
Name: ydjK    Texpresso search in the literature
Synonym(s): ECK1773, G6962, b1775
Genome position(nucleotides): 1858850 <-- 1860229 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
49.2
External database links:  
ASAP:
ABE-0005910
ECHOBASE:
EB3260
ECOLIHUB:
ydjK
OU-MICROARRAY:
b1775
STRING:
511145.b1775
COLOMBOS: ydjK


Product      
Name: putative transporter YdjK
Synonym(s): YdjK
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 49.602
Isoelectric point: 9.253
Motif(s):
 
Type Positions Sequence
26 -> 46 FAIVAFGLLVCWSNAVGGLIL
57 -> 451 NSTTATFSAITTAGMFLGALVGGIIGDKTGRRNAFILYEAIHIASMVVGAFSPNMDFLIACRFVMGVGLGALLVTLFAGFTEYMPGRNRGTWSSRVSFIGNWSYPLCSLIAMGLTPLISAEWNWRVQLLIPAILSLIATALAWRYFPESPRWLESRGRYQEAEKVMRSIEEGVIRQTGKPLPPVVIADDGKAPQAVPYSALLTGVLLKRVILGSCVLIAMNVVQYTLINWLPTIFMTQGINLKDSIVLNTMSMFGAPFGIFIAMLVMDKIPRKTMGVGLLILIAVLGYIYSLQTSMLLITLIGFFLITFVYMYVCYASAVYVPEIWPTEAKLRGSGLANAVGRISGIAAPYAVAVLLSSYGVTGVFILLGAVSIIVAIAIATIGIETKGVSVESL
61 -> 81 ATFSAITTAGMFLGALVGGII
302 -> 322 IVLNTMSMFGAPFGIFIAMLV
421 -> 441 VFILLGAVSIIVAIAIATIGI

 

Classification:
Multifun Terms (GenProtEC)  
  4 - transport --> 4.2 - Electrochemical potential driven transporters --> 4.2.A - Porters (Uni-, Sym- and Antiporters)
  6 - cell structure --> 6.1 - membrane
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
molecular_function GO:0022857 - transmembrane transporter activity
biological_process GO:0055085 - transmembrane transport
Note(s): Note(s): ...[more].
Reference(s): [1] Jindal S., et al., 2019
External database links:  
ECOCYC:
B1775-MONOMER
ECOLIWIKI:
b1775
INTERPRO:
IPR005828
INTERPRO:
IPR020846
INTERPRO:
IPR036259
MODBASE:
P76230
PFAM:
PF00083
PRIDE:
P76230
PROSITE:
PS50850
REFSEQ:
NP_416289
UNIPROT:
P76230


Operon      
Name: ydjLKJIHG         
Operon arrangement:
Transcription unit        Promoter
ydjLKJIHG


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Jindal S., Yang L., Day PJ., Kell DB., 2019, Involvement of multiple influx and efflux transporters in the accumulation of cationic fluorescent dyes by Escherichia coli., BMC Microbiol 19(1):195


RegulonDB