RegulonDB

Gene
Name:	yobF
Synonym(s):	ECK1822, G7000, b1824
Genome position(nucleotides):	1907448 <-- 1907591 Genome Browser
Strand:	reverse
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	42.36
External database links:

ASAP:	ABE-0006072
ECHOBASE:	EB4125
ECOLIHUB:	yobF
OU-MICROARRAY:	b1824
STRING:	511145.b1824
COLOMBOS:	yobF

Product

Name:

DUF2527 domain-containing protein YobF

Synonym(s):

YobF, small protein involved in stress responses

Sequence:

Get amino acid sequence Fasta Format

Cellular location:

membrane

Molecular weight:

5.212

Isoelectric point:

8.492

Motif(s):

Type	Positions	Sequence
	1 -> 38	MCGIFSKEVLSKHVDVEYRFSAEPYIGASCSNVSVLSM

Classification:

Multifun Terms (GenProtEC)
Multifun Terms (GenProtEC)		5 - cell processes --> 5.5 - adaptations --> 5.5.4 - pH
Gene Ontology Terms (GO)
	cellular_component	GO:0016020 - membrane
	biological_process	GO:0034605 - cellular response to heat GO:0036460 - cellular response to cell envelope stress GO:0097533 - cellular stress response to acid chemical

Note(s):

Note(s): ...[more].

Evidence:

[IEP] Inferred from expression pattern
[IMP] Inferred from mutant phenotype

Reference(s):

[1] Hemm MR., et al., 2010
[2] Hobbs EC., et al., 2010

External database links:

ECOCYC:

ECOLIWIKI:

INTERPRO:

PFAM:

PRIDE:

REFSEQ:

UNIPROT:

Operon

Name:

yobF-cspC

Operon arrangement:

Transcription unit	Promoter
yobF-cspC	yobFp2
yobF-cspC	yobFp1

Transcriptional Regulation
	Display Regulation
Repressed by:	BtsR

RNA cis-regulatory element

Cis-reg; thermoregulator	cspA thermoregulator

Regulation by small RNA
	Display Regulation
small RNA	cyaR

Elements in the selected gene context region unrelated to any object in RegulonDB

	Type	Name	Post Left	Post Right	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
	promoter	cspCp8	1907509		reverse	nd	[ICWHO]	[3]

Evidence
[ICWHO] Inferred computationally without human oversight

Reference(s)
[1] Hemm MR., Paul BJ., Miranda-Rios J., Zhang A., Soltanzad N., Storz G., 2010, Small stress response proteins in Escherichia coli: proteins missed by classical proteomic studies., J Bacteriol 192(1):46-58
[2] Hobbs EC., Astarita JL., Storz G., 2010, Small RNAs and small proteins involved in resistance to cell envelope stress and acid shock in Escherichia coli: analysis of a bar-coded mutant collection., J Bacteriol 192(1):59-67
[3] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78