RegulonDB RegulonDB 10.10: Gene Form
   

yeeL gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yeeJ shiA yeeL TSS_2288 TSS_2288 shiAp shiAp shiAp11 shiAp11 TSS_2286 TSS_2286

Gene      
Name: yeeL    Texpresso search in the literature
Synonym(s): ECK1975, G7066, b1979, b1980, b4497, yeeK
Type: Pseudo Gene
Genome position(nucleotides): 2052276 <-- 2053328 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 38.75
External database links:  
ASAP:
 ABE-0006565
ASAP:
 ABE-0006568
ASAP:
 ABE-0285098
ECOLIHUB:
 yeeL_1
ECOLIHUB:
 yeeL_2
OU-MICROARRAY:
 b1979
OU-MICROARRAY:
 b1980
COLOMBOS: yeeL


Product      
Name: putative glycosyltransferase, N-terminal fragment
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 8.287
Motif(s):
 
Type Positions Sequence
1 -> 234 MFLASLLRRIAFSYYDYKAYNFNIEKTDFVVIHIPDQIGDAMAIFPVIRALELHKIKHLLIVTSTINLEVFNALKLEQTKLTLVTMTMQDHATLKEIKDLAKNITQQYGTPDLCIEGMRKKNLKTMLFISQLKAKTNFQVVGITMNCFSPLCKNASSMDQKLRAPVPMTWAFMMREAGFPAVRPIYELPLSEDVLDEVREEMRSLGSYIAFNLEGSSQERTFSLSIAENLIAKI

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
 G7066-MONOMER
ECOLIWIKI:
 b1980
INTERPRO:
 IPR002201
MODBASE:
 P76349
PFAM:
 PF01075
PRIDE:
 P76349
UNIPROT:
 P76349


Operon      
Name: yeeL         
Operon arrangement:
Transcription unit        Promoter
yeeL


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2286 2051392 reverse nd [RS-EPT-CBR] [1]
  promoter shiAp11 2053534 forward nd [ICWHO] [2]
  promoter TSS_2288 2054169 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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