Gene
Name:	yeeN
Synonym(s):	ECK1978, G7068, b1983
Genome position(nucleotides):	2056858 --> 2057574 Genome Browser
Strand:	forward
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	39.89
External database links:

ASAP:	ABE-0006582
ECHOBASE:	EB3163
OU-MICROARRAY:	b1983
PortEco:	yeeN
STRING:	511145.b1983
COLOMBOS:	yeeN

Type	Name	Post Left	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
promoter	yeeNp7	2056754	forward	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 4.26. P-value: 6.705e-5 Read more >	[ICWHO]	[2]
promoter	yeeNp4	2056792	forward	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: good homology. Score: 3.574. P-value: 7.636e-5 Read more >	[ICWHO]	[2]
promoter	TSS_2290 (cluster)	2056797	forward	For this promoter, there is a cluster of 2 transcription start sites,in the interval 2056797 to 2056798, where the highest frequency is at position 2054822. The most upstream position of this cluster is assigned as TSS position in the promoter. Read more >	[RS-EPT-CBR]	[3]
promoter	TSS_2291	2056817	forward	nd	[RS-EPT-CBR]	[3]
promoter	TSS_2292	2056826	forward	nd	[RS-EPT-CBR]	[3]
promoter	TSS_2293 (cluster)	2056836	forward	For this promoter, there is a cluster of 4 transcription start sites,in the interval 2056836 to 2056839, where the highest frequency is at position 2054862. The most upstream position of this cluster is assigned as TSS position in the promoter. Read more >	[RS-EPT-CBR]	[3]
promoter	TSS_2294 (cluster)	2056849	forward	For this promoter, there is a cluster of 2 transcription start sites,in the interval 2056849 to 2056850, where the highest frequency is at position 2054873. The most upstream position of this cluster is assigned as TSS position in the promoter. Read more >	[RS-EPT-CBR]	[3]
promoter	TSS_2295	2056852	forward	nd	[RS-EPT-CBR]	[3]

Evidence
[ICWHO] Inferred computationally without human oversight
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

Reference(s)
[1] Paradis-Bleau C., Kritikos G., Orlova K., Typas A., Bernhardt TG., 2014, A genome-wide screen for bacterial envelope biogenesis mutants identifies a novel factor involved in cell wall precursor metabolism., PLoS Genet 10(1):e1004056
[2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78
[3] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.