RegulonDB

Gene
Name:	yeeO
Synonym(s):	ECK1980, G7070, b1985
Genome position(nucleotides):	2058203 <-- 2059846 Genome Browser
Strand:	reverse
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	48.3
External database links:

ASAP:	ABE-0006586
ECHOBASE:	EB3164
ECOLIHUB:	yeeO
OU-MICROARRAY:	b1985
STRING:	511145.b1985
COLOMBOS:	yeeO

Product

Name:

FMN/FAD exporter

Synonym(s):

YeeO

Sequence:

Get amino acid sequence Fasta Format

Cellular location:

inner membrane

Molecular weight:

60.061

Isoelectric point:

10.379

Motif(s):

Classification:

Multifun Terms (GenProtEC)
		4 - transport --> 4.2 - Electrochemical potential driven transporters --> 4.2.A - Porters (Uni-, Sym- and Antiporters)
		6 - cell structure --> 6.1 - membrane
Gene Ontology Terms (GO)
	cellular_component	GO:0016020 - membrane GO:0005886 - plasma membrane GO:0005887 - integral component of plasma membrane GO:0016021 - integral component of membrane
	molecular_function	GO:0015297 - antiporter activity GO:0042910 - xenobiotic transmembrane transporter activity GO:0071916 - dipeptide transmembrane transporter activity GO:0015230 - FAD transmembrane transporter activity GO:0044610 - FMN transmembrane transporter activity
	biological_process	GO:0015031 - protein transport GO:0015833 - peptide transport GO:0055085 - transmembrane transport GO:0042908 - xenobiotic transport GO:1901264 - carbohydrate derivative transport GO:0035442 - dipeptide transmembrane transport GO:0035350 - FAD transmembrane transport

Note(s):

Note(s): ...[more].

Reference(s):

[1] McAnulty MJ., et al., 2014

External database links:

ECOCYC:

ECOLIWIKI:

INTERPRO:

PFAM:

PRIDE:

REFSEQ:

UNIPROT:

Operon

Name:

yeeO

Operon arrangement:

Transcription unit	Promoter
yeeO

Elements in the selected gene context region unrelated to any object in RegulonDB

Type	Name	Post Left	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
promoter	TSS_2296	2059688	reverse	nd	[RS-EPT-CBR]	[2]
promoter	TSS_2297	2059690	reverse	nd	[RS-EPT-CBR]	[2]
promoter	yeeOp7	2059722	reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 4.26. P-value: 2.866e-5 Read more >	[ICWHO]	[3]
promoter	yeeOp1	2059828	reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: poor homology. Score: -1.53. P-value: 6.928e-6 Read more >	[ICWHO]	[3]
promoter	TSS_2298	2059842	forward	nd	[RS-EPT-CBR]	[2]
promoter	TSS_2299	2059851	forward	nd	[RS-EPT-CBR]	[2]
promoter	yeeOp6	2059875	reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: good homology. Score: 3.505. P-value: 6.773e-5 Read more >	[ICWHO]	[3]

Evidence
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates
[ICWHO] Inferred computationally without human oversight

Reference(s)
[1] McAnulty MJ., Wood TK., 2014, YeeO from Escherichia coli exports flavins., Bioengineered 5(6):386-92
[2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.
[3] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78