RegulonDB

Gene
Name:	gatZ
Synonym(s):	ECK2088, G7128, b2095
Genome position(nucleotides):	2175059 <-- 2176321 Genome Browser
Strand:	reverse
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	48.93
External database links:

ASAP:	ABE-0006934
ECHOBASE:	EB2317
OU-MICROARRAY:	b2095
PortEco:	gatZ
STRING:	511145.b2095
COLOMBOS:	gatZ

Product

Name:

tagatose-1,6-bisphosphate aldolase 2 subunit GatZ

Synonym(s):

GatZ

Sequence:

Get amino acid sequence Fasta Format

Cellular location:

inner membrane

Molecular weight:

47.109

Isoelectric point:

5.575

Motif(s):

Type	Positions	Sequence
	1 -> 418	MKTLIARHKAGEHIGICSVCSAHPLVIEAALAFDRNSTRKVLIEATSNQVNQFGGYTGMTPADFREFVFTIADKVGFARERIILGGDHLGPNCWQQENADAAMEKSVELVKEYVRAGFSKIHLDASMSCAGDPIPLAPETVAERAAVLCFAAESVATDCQREQLSYVIGTEVPVPGGEASAIQSVHITHVEDAANTLRTHQKAFIARGLTEALTRVIAIVVQPGVEFDHSNIIHYQPQEAQPLAQWIENTRMVYEAHSTDYQTRTAYWELVRDHFAILKVGPALTFALREAIFALAQIEQELIAPENRSGCLAVIEEVMLDEPQYWKKYYRTGFNDSLLDIRYSLSDRIRYYWPHSRIKNSVETMMVNLEGVDIPLGMISQYLPKQFERIQSGELSAIPHQLIMDKIYDVLRAYRYGC

Classification:

Multifun Terms (GenProtEC)
Multifun Terms (GenProtEC)		1 - metabolism --> 1.1 - carbon utilization --> 1.1.1 - carbon compounds
Gene Ontology Terms (GO)
	cellular_component	GO:0005887 - integral component of plasma membrane
	molecular_function	GO:0003824 - catalytic activity
	biological_process	GO:0005975 - carbohydrate metabolic process GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system GO:0019402 - galactitol metabolic process GO:0019404 - galactitol catabolic process GO:2001059 - D-tagatose 6-phosphate catabolic process

Note(s):

Note(s): ...[more].

External database links:

DIP:

ECOCYC:

ECOLIWIKI:

INTERPRO:

INTERPRO:

INTERPRO:

PFAM:

PRIDE:

REFSEQ:

SMR:

SWISSMODEL:

UNIPROT:

Operon

Name:

gatYZABCD

Operon arrangement:

Transcription unit	Promoter
gatZABCD	gatZp
gatYZABCD	gatYp

Transcriptional Regulation
	Display Regulation
Activated by:	CRP
Repressed by:	ArcA, GatR

Regulation by small RNA
	Display Regulation
small RNA	gcvB, gcvB

Elements in the selected gene context region unrelated to any object in RegulonDB

Type	Name	Post Left	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
promoter	TSS_2411	2174704	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2412 (cluster)	2174716	reverse	For this promoter, there is a cluster of 4 transcription start sites,in the interval 2174713 to 2174716, where the highest frequency is at position 2172735. The most upstream position of this cluster is assigned as TSS position in the promoter. Read more >	[RS-EPT-CBR]	[1]
promoter	TSS_2413	2174721	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2414	2175103	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2415	2175270	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2416	2175336	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2417	2176110	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2418	2176118	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2419 (cluster)	2176382	reverse	For this promoter, there is a cluster of 2 transcription start sites,in the interval 2176381 to 2176382, where the highest frequency is at position 2174404. The most upstream position of this cluster is assigned as TSS position in the promoter. Read more >	[RS-EPT-CBR]	[1]
promoter	TSS_2421 (cluster)	2176636	reverse	For this promoter, there is a cluster of 5 transcription start sites,in the interval 2176632 to 2176636, where the highest frequency is at position 2174657. The most upstream position of this cluster is assigned as TSS position in the promoter. Read more >	[RS-EPT-CBR]	[1]
promoter	TSS_2422	2176657	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2423	2176773	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2424	2176779	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2425	2176864	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2426	2177023	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2427	2177046	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2428	2177069	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2429	2177071	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2430	2177123	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2431	2177200	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2432	2177204	reverse	nd	[RS-EPT-CBR]	[1]

Evidence
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

Reference(s)
[1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

Reference(s)

[1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.