RegulonDB

Gene
Name:	yfaX
Synonym(s):	ECK2241, G7161, b2248
Genome position(nucleotides):	2361429 <-- 2362211
Strand:	reverse
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	50.96
External database links:

ASAP:	ABE-0007438
ECHOBASE:	EB3839
ECOLIHUB:	yfaX
OU-MICROARRAY:	b2248
STRING:	511145.b2248
COLOMBOS:	yfaX

Product

Name:

putative DNA-binding transcriptional regulator YfaX

Synonym(s):

YfaX

Sequence:

Get amino acid sequence Fasta Format

Cellular location:

cytosol

Molecular weight:

28.904

Isoelectric point:

7.468

Motif(s):

Type	Positions	Sequence	Comment
	7 -> 67	VPALTRAIDILNLIARIGPCSAATIIDTLGIPKSTAYLLLNELRRQRFLSLDHQENFCLWT	UniProt: HTH iclR-type.
	9 -> 58	ALTRAIDILNLIARIGPCSAATIIDTLGIPKSTAYLLLNELRRQRFLSLD
	28 -> 47	AATIIDTLGIPKSTAYLLLN	UniProt: H-T-H motif.
	82 -> 251	LRELARPRLTQLMDTTGLLCHLGIIDNGSAYYILKVESSATISVRSHEGKSLSLYRSGIGKCLLAWQPAAVQQSIIEGLVWEQATPTTITHPQQLHEELARIRRQGWSYDNGEDYADVRCVAAPVFNANNELTAAISVVGTRLQINEEYRDYLAGKAIACARDISRLLGW	UniProt: IclR-ED.
	122 -> 247	TISVRSHEGKSLSLYRSGIGKCLLAWQPAAVQQSIIEGLVWEQATPTTITHPQQLHEELARIRRQGWSYDNGEDYADVRCVAAPVFNANNELTAAISVVGTRLQINEEYRDYLAGKAIACARDISR

Classification:

Multifun Terms (GenProtEC)
		2 - information transfer --> 2.2 - RNA related --> 2.2.2 - Transcription related
		3 - regulation --> 3.1 - type of regulation --> 3.1.2 - transcriptional level
Gene Ontology Terms (GO)
	cellular_component	GO:0005829 - cytosol
	molecular_function	GO:0003677 - DNA binding GO:0005515 - protein binding GO:0003700 - DNA-binding transcription factor activity
	biological_process	GO:0006351 - transcription, DNA-templated GO:0006355 - regulation of transcription, DNA-templated GO:0045892 - negative regulation of transcription, DNA-templated

Note(s):

Note(s): ...[more].

Evidence:

[COMP-HINF-FN-FROM-SEQ] Human inference of function from sequence

Reference(s):

[1] Perez-Rueda E., et al., 2000
[2] Perez-Rueda E., et al., 2004

External database links:

ALPHAFOLD:

DIP:

ECOCYC:

ECOLIWIKI:

INTERPRO:

INTERPRO:

INTERPRO:

INTERPRO:

INTERPRO:

MODBASE:

PFAM:

PFAM:

PRIDE:

PROSITE:

PROSITE:

REFSEQ:

SMART:

SMR:

UNIPROT:

Reference(s)
[1] Perez-Rueda E., Collado-Vides J., 2000, The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12., Nucleic Acids Res 28(8):1838-47
[2] Perez-Rueda E., Collado-Vides J., Segovia L., 2004, Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea., Comput Biol Chem 28(5-6):341-50

RNA cis-regulatory element

Attenuation:	Translational