RegulonDB

Gene
Name:	arnC
Synonym(s):	ECK2247, G7167, b2254, pmrF, yfbF
Genome position(nucleotides):	2367071 --> 2368039 Genome Browser
Strand:	forward
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	49.85
External database links:

ASAP:	ABE-0007458
ECHOBASE:	EB3843
ECOLIHUB:	arnC
MIM:	608799
OU-MICROARRAY:	b2254
STRING:	511145.b2254
COLOMBOS:	arnC

Product

Name:

undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase

Synonym(s):

ArnC, PmrF, YfbF

Sequence:

Get amino acid sequence Fasta Format

Cellular location:

inner membrane

Molecular weight:

36.339

Isoelectric point:

7.322

Motif(s):

Type	Positions	Sequence
	11 -> 171	SVVIPVYNEQESLPELIRRTTTACESLGKEYEILLIDDGSSDNSAHMLVEASQAENSHIVSILLNRNYGQHSAIMAGFSHVTGDLIITLDADLQNPPEEIPRLVAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQRTTGKAMGDYGCMLRAYRRHIV
	270 -> 290	VFMLFAVLFTFIGAQFIGMGL
	236 -> 256	LSLLGSIIAIGGFSIAVLLVI

Classification:

Multifun Terms (GenProtEC)
Multifun Terms (GenProtEC)		1 - metabolism --> 1.6 - biosynthesis of macromolecules (cellular constituents) --> 1.6.3 - lipopolysaccharide --> 1.6.3.3 - lipid A
Gene Ontology Terms (GO)
	cellular_component	GO:0016020 - membrane GO:0005886 - plasma membrane GO:0016021 - integral component of membrane
	molecular_function	GO:0016757 - transferase activity, transferring glycosyl groups GO:0016740 - transferase activity GO:0016780 - phosphotransferase activity, for other substituted phosphate groups GO:0099621 - undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase activity
	biological_process	GO:0006629 - lipid metabolic process GO:0009103 - lipopolysaccharide biosynthetic process GO:0009245 - lipid A biosynthetic process GO:0046677 - response to antibiotic GO:0036108 - 4-amino-4-deoxy-alpha-L-arabinopyranosyl undecaprenyl phosphate biosynthetic process

Note(s):

Note(s): ...[more].

External database links:

CAZY:

ECOCYC:

ECOLIWIKI:

INTERPRO:

INTERPRO:

INTERPRO:

MODBASE:

PFAM:

PRIDE:

PRODB:

REFSEQ:

UNIPROT:

Operon

Name:

arnBCADTEF

Operon arrangement:

Transcription unit	Promoter
arnBCADTEF

Elements in the selected gene context region unrelated to any object in RegulonDB

	Type	Name	Post Left	Post Right	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
	promoter	TSS_2517	2367228		forward	nd	[RS-EPT-CBR]	[1]
	promoter	TSS_2518	2369128		forward	nd	[RS-EPT-CBR]	[1]

Evidence
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

Reference(s)
[1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

Reference(s)

[1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.