RegulonDB RegulonDB 10.9: Gene Form
   

yfcU gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yfcU yfcS yfcV

Gene      
Name: yfcU    Texpresso search in the literature
Synonym(s): ECK2331, ECK2332, G7209, b2337, b2338, b4661, yfcT
Type: Pseudo Gene
Genome position(nucleotides): 2452356 <-- 2455001 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 51.74
External database links:  
ASAP:
 ABE-0285125
ASAP:
 ABE-0007713
ECHOBASE:
 EB3876
ECHOBASE:
 EB4380
ECOLIHUB:
 yfcU
ECOLIHUB:
 yfcT
ECOLIWIKI:
 b2337
OU-MICROARRAY:
 b2337
OU-MICROARRAY:
 b2338
UNIPROT:
 P77196
COLOMBOS: yfcU


Product      
Name: putative outer membrane usher protein YfcU
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 4.495
Motif(s):
 
Type Positions Sequence
1 -> 29 MPDHSLFRLRILPWCIALAMSGSYSSVWA

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0009279 - cell outer membrane
GO:0016020 - membrane
GO:0016021 - integral component of membrane
molecular_function GO:0015473 - fimbrial usher porin activity
biological_process GO:0009297 - pilus assembly
GO:0043711 - pilus organization
GO:0055085 - transmembrane transport
Note(s): Note(s): ...[more].
Reference(s): [1] Korea CG., et al., 2011
[2] Wurpel DJ., et al., 2013
External database links:  
ECOCYC:
 G7209-MONOMER
ECOLIWIKI:
 b2338
PFAM:
 PF00577
PFAM:
 PF13954
REFSEQ:
 YP_026167
UNIPROT:
 P77196


Operon      
Name: yfcUSRQPO         
Operon arrangement:
Transcription unit        Promoter
yfcUSRQPO


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Korea CG., Ghigo JM., Beloin C., 2011, The sweet connection: Solving the riddle of multiple sugar-binding fimbrial adhesins in Escherichia coli: Multiple E. coli fimbriae form a versatile arsenal of sugar-binding lectins potentially involved in surface-colonisation and tissue tropism., Bioessays 33(4):300-11

 [2] Wurpel DJ., Beatson SA., Totsika M., Petty NK., Schembri MA., 2013, Chaperone-usher fimbriae of Escherichia coli., PLoS One 8(1):e52835

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