RegulonDB RegulonDB 10.9: Gene Form
   

yfdC gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yfdC mlaA argW Fis argWp argWp mlaAp mlaAp

Gene      
Name: yfdC    Texpresso search in the literature
Synonym(s): ECK2341, G7217, b2347
Genome position(nucleotides): 2465301 --> 2466233 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
48.55
External database links:  
ASAP:
ABE-0007751
ECHOBASE:
EB2319
ECOLIHUB:
yfdC
OU-MICROARRAY:
b2347
STRING:
511145.b2347
COLOMBOS: yfdC


Product      
Name: inner membrane protein YfdC
Synonym(s): YfdC
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 34.503
Isoelectric point: 5.067
Motif(s):
 
Type Positions Sequence
59 -> 81 LLWSAIAAGLSMGASLLAKGIFQ
213 -> 232 IVVIILMTWLIALGDTTHIV
91 -> 113 FLLENLGYTFGFIIVIMARQQLF
134 -> 156 GLLIRLWGVVLLGNILGTGIAAW
40 -> 276 IHEHIRQDGEKELERDAMALLWSAIAAGLSMGASLLAKGIFQVELEGVPGSFLLENLGYTFGFIIVIMARQQLFTENTVTAVLPVMQKPTMSNVGLLIRLWGVVLLGNILGTGIAAWAFEYMPIFNEETRDAFVKIGMDVMKNTPSEMFANAIISGWLIATMVWMFPAAGAAKIVVIILMTWLIALGDTTHIVVGSVEILYLVFNGTLHWSDFIWPFALPTLAGNICGGTFIFALMS

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0005887 - integral component of plasma membrane
GO:0016021 - integral component of membrane
molecular_function GO:0022857 - transmembrane transporter activity
GO:0015499 - formate transmembrane transporter activity
biological_process GO:0055085 - transmembrane transport
GO:0015724 - formate transport
Note(s): Note(s): ...[more].
Reference(s): [1] Jindal S., et al., 2019
External database links:  
ECOCYC:
G7217-MONOMER
ECOLIWIKI:
b2347
INTERPRO:
IPR000292
INTERPRO:
IPR023271
PANTHER:
PTHR30520
PFAM:
PF01226
PRIDE:
P37327
REFSEQ:
NP_416849
UNIPROT:
P37327


Operon      
Name: yfdC         
Operon arrangement:
Transcription unit        Promoter
yfdC


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Jindal S., Yang L., Day PJ., Kell DB., 2019, Involvement of multiple influx and efflux transporters in the accumulation of cationic fluorescent dyes by Escherichia coli., BMC Microbiol 19(1):195


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