RegulonDB RegulonDB 10.8: Gene Form
   

tfaS gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yfdL yfdK tfaS ryeG yodE terminator anti-terminator anti-anti-terminator TSS_2661 TSS_2661 TSS_2660 TSS_2660 TSS_2659 (cluster) TSS_2659 (cluster) TSS_2658 TSS_2658

Gene      
Name: tfaS    Texpresso search in the literature
Synonym(s): ECK2347, G7222, b2353, yfdJ
Type: Pseudo Gene
Genome position(nucleotides): 2470803 --> 2471105 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 54.46
Note(s): CPS-53 (KpLE1) prophage; tail fiber assembly protein fragment
No information about this gene was found by a literature search conducted on September 27, 2013.
External database links:  
ASAP:
 ABE-0007768
ECHOBASE:
 EB3886
ECOO157CYC:
 Z2983
OU-MICROARRAY:
 b2353
PortEco:
 tfaS
COLOMBOS: tfaS


Operon      
Name: tfaS         
Operon arrangement:
Transcription unit        Promoter
 


RNA cis-regulatory element    
Attenuation: Transcriptional


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2658 2470649 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_2659 (cluster) 2470665 reverse For this promoter, there
Read more > 		[RS-EPT-CBR] [1]
  promoter TSS_2660 2470691 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_2661 2470748 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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