RegulonDB RegulonDB 11.0: Gene Form
   

yfdO gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yfdN yfdO yfdP yfdM terminator anti-terminator anti-anti-terminator yfdPp9 yfdPp9 yfdPp6 yfdPp6 yfdPp5 yfdPp5

Gene      
Name: yfdO    Texpresso search in the literature
Synonym(s): ECK2352, G7227, b2358, oweS
Genome position(nucleotides): 2472878 <-- 2473246
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 56.1
External database links:  
ASAP:
 ABE-0007779
ECHOBASE:
 EB3889
ECOLIHUB:
 yfdO
ECOO157CYC:
 Z0312
ECOO157CYC:
 Z1450
ECOO157CYC:
 Z3356
ECOO157CYC:
 Z1868
OU-MICROARRAY:
 b2358
STRING:
 316407.85675372
COLOMBOS: yfdO


Product      
Name: CPS-53 (KpLE1) prophage; protein YdfO
Synonym(s): CPS-53 (KpLE1) prophage; putative defective phage replication protein O, OweS, YfdO
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 14.401
Isoelectric point: 7.819
Classification:
Multifun Terms (GenProtEC)  
  5 - cell processes --> 5.5 - adaptations --> 5.5.6 - other (mechanical, nutritional, oxidative stress)
  8 - extrachromosomal --> 8.1 - prophage genes and phage related functions
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
biological_process GO:0006979 - response to oxidative stress
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 P0AD35
ECOCYC:
 G7227-MONOMER
ECOLIWIKI:
 b2358
ECOO157CYC:
 Z3356-MONOMER
ECOO157CYC:
 Z1868-MONOMER
ECOO157CYC:
 Z0312-MONOMER
ECOO157CYC:
 Z1450-MONOMER
PRIDE:
 P0AD35
REFSEQ:
 NP_416859
SMR:
 P0AD35
UNIPROT:
 P0AD35


Operon      
Name: yfdONMLK         
Operon arrangement:
Transcription unit        Promoter
yfdONMLK


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter yfdPp5 2473422 forward nd [ICWHO] [1]
  promoter yfdPp6 2473536 forward nd [ICWHO] [1]
  promoter yfdPp9 2473572 forward nd [ICWHO] [1]


Evidence    

 [ICWHO] Inferred computationally without human oversight


Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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