RegulonDB RegulonDB 10.9: Gene Form
   

yfdQ gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yfdQ yfdR yfdP yfdS terminator

Gene      
Name: yfdQ    Texpresso search in the literature
Synonym(s): ECK2354, G7229, b2360
Genome position(nucleotides): 2474032 --> 2474856 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
45.7
External database links:  
ASAP:
ABE-0007788
ECHOBASE:
EB3891
ECOLIHUB:
yfdQ
OU-MICROARRAY:
b2360
STRING:
511145.b2360
COLOMBOS: yfdQ


Product      
Name: CPS-53 (KpLE1) prophage; DUF2303 domain-containing protein YfdQ
Synonym(s): YfdQ
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 30.442
Isoelectric point: 4.711
Motif(s):
 
Type Positions Sequence
7 -> 272 ATAINQIHALISAQGVNEIISKIGADAVALPENFRIHDLEKFNLNRFRFRGALSTASIDDFTRYSKDLADEGTRCFIDADNMRAVSVLNLGTIDEPGHADNTATLKLKKTAPFSALLSVNGERNSQKSLAEWIEDWADYLVGFDANGDAIQATKAAAAIRKITIEANQTADFEDNDFSGKRSLMESVEAKTKDIMPVAFEFKCVPFEGLKERPFKLRLSIITGDRPVLVLRIIQLEAVQEDMANEFRDLLVEKFKDSKVETFIGTF

 

Classification:
Multifun Terms (GenProtEC)  
  8 - extrachromosomal --> 8.1 - prophage genes and phage related functions
Gene Ontology Terms (GO)  
biological_process GO:0016032 - viral process
Note(s): Note(s): ...[more].
Reference(s): [1] Chen SS., et al., 2013
External database links:  
DIP:
DIP-12005N
ECOCYC:
G7229-MONOMER
ECOLIWIKI:
b2360
INTERPRO:
IPR019276
PFAM:
PF10065
PRIDE:
P76513
REFSEQ:
NP_416861
UNIPROT:
P76513


Operon      
Name: yfdPQ         
Operon arrangement:
Transcription unit        Promoter
yfdPQ


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Chen SS., Williamson JR., 2013, Characterization of the ribosome biogenesis landscape in E. coli using quantitative mass spectrometry., J Mol Biol 425(4):767-79


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