RegulonDB

Gene
Name:	yfdV
Synonym(s):	ECK2368, G7235, b2372
Genome position(nucleotides):	2489242 <-- 2490186
Strand:	reverse
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	44.76
External database links:

ASAP:	ABE-0007824
ECHOBASE:	EB3896
ECOLIHUB:	yfdV
OU-MICROARRAY:	b2372
STRING:	511145.b2372
COLOMBOS:	yfdV

Product

Name:

putative transport protein YfdV

Synonym(s):

YfdV

Sequence:

Get amino acid sequence Fasta Format

Cellular location:

inner membrane

Molecular weight:

33.616

Isoelectric point:

9.136

Motif(s):

Type	Positions	Sequence	Comment
	4 -> 23	FFIGDLLPIIVIMLLGYFSG	UniProt: Helical.
	6 -> 161	IGDLLPIIVIMLLGYFSGRRETFSEDQARAFNKLVLNYALPAALFVSITRANREMIFADTRLTLVSLVVIVGCFFFSWFGCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPIYGDSVSTGLVVAIISIIVNAITIPIGLYLLNPSSGADGKKN
	36 -> 53	FNKLVLNYALPAALFVSI	UniProt: Helical.
	68 -> 90	TLVSLVVIVGCFFFSWFGCYKFF	UniProt: Helical.
	97 -> 116	AAVCALIAGSPTIGFLGFAV	UniProt: Helical.

Classification:

Multifun Terms (GenProtEC)
Multifun Terms (GenProtEC)		4 - transport --> 4.2 - Electrochemical potential driven transporters --> 4.2.A - Porters (Uni-, Sym- and Antiporters)
Gene Ontology Terms (GO)
	cellular_component	GO:0016020 - membrane GO:0005886 - plasma membrane GO:0016021 - integral component of membrane
	biological_process	GO:0055085 - transmembrane transport

Note(s):

Note(s): ...[more].

Evidence:

[COMP-AINF-FN-FROM-SEQ] Automated inference of function from sequence

Reference(s):

[1] Riley M., et al., 2006
[2] Serres MH., et al., 2001

External database links:

ALPHAFOLD:

DIP:

ECOCYC:

ECOLIWIKI:

INTERPRO:

PFAM:

PRIDE:

REFSEQ:

UNIPROT:

Operon

Name:

yfdX-frc-oxc-yfdVE

Operon arrangement:

Transcription unit	Promoter
frc	frcp
yfdX	yfdXp
oxc
yfdE
yfdV

Transcriptional Regulation
	Display Regulation
Activated by:	EvgA

RNA cis-regulatory element

Attenuation:	Translational

Elements in the selected gene context region unrelated to any object in RegulonDB

	Type	Name	Post Left	Post Right	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References

Reference(s)
[1] Riley M., Abe T., Arnaud MB., Berlyn MK., Blattner FR., Chaudhuri RR., Glasner JD., Horiuchi T., Keseler IM., Kosuge T., Mori H., Perna NT., Plunkett G., Rudd KE., Serres MH., Thomas GH., Thomson NR., Wishart D., Wanner BL., 2006, Escherichia coli K-12: a cooperatively developed annotation snapshot--2005., Nucleic Acids Res 34(1):1-9
[2] Serres MH., Gopal S., Nahum LA., Liang P., Gaasterland T., Riley M., 2001, A functional update of the Escherichia coli K-12 genome., Genome Biol 2(9):RESEARCH0035